RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 HILPDAQ9Y5L2 63 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 PKD1L1Q8TDX9 2849 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 A0A087WXM4 84 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 TMEM272A0A1B0GTI8 110 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 A0A1B0GUS0 222 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 LEUTXA8MZ59 168 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 CHST1O43916 411 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 CRYBA1P05813 215 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 CD36P16671 472 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 MYL9P24844 172 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 BLVRBP30043 206 aaPredicted RBP10.44□□□□□ -0.74
VPS28-216ENST00000533806 FAM189A2Q15884 450 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 Q3ZCU0 254 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 TPTE2P1Q5T6R2 138 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 HES5Q5TA89 166 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 FAM53AQ6NSI3 398 aaPredicted RBP10.44□□□□□ -0.74
VPS28-216ENST00000533806 ZNF880Q6PDB4 577 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 LIAT1Q6ZQX7 453 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 TPRA1Q86W33 373 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 OR4F5Q8NH21 305 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 NDNFQ8TB73 568 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 CREB3L1Q96BA8 519 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 GFOD1Q9NXC2 390 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 TRAPPC2LQ9UL33 140 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 SSR3Q9UNL2 185 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 TCF19Q9Y242 345 aa10.44□□□□□ -0.74
VPS28-216ENST00000533806 TRRAPQ9Y4A5 3859 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 TRBV6-6A0A0A6YYG2 114 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 CLPSL1A2RUU4 121 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 OOSP1A8MZH6 123 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 TOR1AO14656 332 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 IGHV3-7P01780 117 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 HBZP02008 142 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 GADD45AP24522 165 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 RANBP1P43487 201 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 EFNB2P52799 333 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 LY6EQ16553 131 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 TMEM30BQ3MIR4 351 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 PLA1AQ53H76 456 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 PLAC9Q5JTB6 97 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 NKAPLQ5M9Q1 402 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 C6orf183Q5T699 404 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 TRAT1Q6PIZ9 186 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 C5orf24Q7Z6I8 188 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 LINC00311Q8N616 119 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 C3orf56Q8N813 242 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 ZNF439Q8NDP4 499 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 UBALD1Q8TB05 177 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 PTX4Q96A99 478 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 URM1Q9BTM9 101 aaKnown RBP10.43□□□□□ -0.74
VPS28-216ENST00000533806 LIN7BQ9HAP6 207 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 BEX1Q9HBH7 125 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 TAF9BQ9HBM6 251 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 RAB22AQ9UL26 194 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 KCNK7Q9Y2U2 307 aa10.43□□□□□ -0.74
VPS28-216ENST00000533806 A0A0B4J203 849 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 FAM90A9PA6NNJ1 464 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 NOTOA8MTQ0 251 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 SDCBPO00560 298 aaPredicted RBP10.42□□□□□ -0.74
VPS28-216ENST00000533806 SLC2A2P11168 524 aaPredicted RBP10.42□□□□□ -0.74
VPS28-216ENST00000533806 RAB6AP20340 208 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 SDC2P34741 201 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 CEACAM3P40198 252 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 ZNF134P52741 427 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 PROK1P58294 105 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 DIAPH2-AS1Q14236 149 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 LTC4SQ16873 150 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 FBLN7Q53RD9 439 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 OLFML2AQ68BL7 652 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 OR1L1Q8NH94 360 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 ST6GALNAC6Q969X2 333 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 YIPF6Q96EC8 236 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 CHCHD6Q9BRQ6 235 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 CENPOQ9BU64 300 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 RNF167Q9H6Y7 350 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 PLEKHJ1Q9NW61 149 aa10.42□□□□□ -0.74
VPS28-216ENST00000533806 RAB27BO00194 218 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 SPINT2O43291 252 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 KIR2DS4P43632 304 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 VEGFCP49767 419 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 KRTAP10-3P60369 221 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 HTD2P86397 168 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 HABP2Q14520 560 aaPredicted RBP10.41□□□□□ -0.74
VPS28-216ENST00000533806 HMGN3Q15651 99 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 MOGAT2Q3SYC2 334 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 CT45A1Q5HYN5 189 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 STEAP3Q658P3 488 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 DHRS7BQ6IAN0 325 aaPredicted RBP10.41□□□□□ -0.74
VPS28-216ENST00000533806 SLC25A48Q6ZT89 311 aaKnown RBP10.41□□□□□ -0.74
VPS28-216ENST00000533806 Q8N2B8 174 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 OR56B1Q8NGI3 324 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 CT45A3Q8NHU0 189 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 WFDC12Q8WWY7 111 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 ARHGAP5-AS1Q96IT6 56 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 KCTD7Q96MP8 289 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 OCSTAMPQ9BR26 566 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 PECRQ9BY49 303 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 RIMS4Q9H426 269 aaPredicted RBP10.41□□□□□ -0.74
VPS28-216ENST00000533806 RAB18Q9NP72 206 aa10.41□□□□□ -0.74
VPS28-216ENST00000533806 ABCB10Q9NRK6 738 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms