RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 OR11H6Q8NGC7 330 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 OR10V1Q8NGI7 309 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 ZNF596Q8TC21 504 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 IL1F10Q8WWZ1 152 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 DCSTAMPQ9H295 470 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 DPAGT1Q9H3H5 408 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 RIMS4Q9H426 269 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 TAF9BQ9HBM6 251 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 ESM1Q9NQ30 184 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 C12orf4Q9NQ89 552 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 HILPDAQ9Y5L2 63 aa9.29□□□□□ -0.92
LIMCH1-210ENST00000509454 A0A1W2PPE3 182 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 ODF3BA8MYP8 253 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 NPIPB11E5RHQ5 1161 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 C15orf65H3BRN8 121 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 SCGNO76038 276 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 CGB3P0DN86 165 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 CGB7P0DN87 165 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 HIST1H1DP16402 221 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 HTR1DP28221 377 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 RORCP51449 518 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 UBA52P62987 128 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 ACTG1P63261 375 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 SLC9A3R2Q15599 337 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 SSX2Q16385 188 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 CTF1Q16619 201 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 MOB1BQ7L9L4 216 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 SAMD12Q8N8I0 201 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 ZDHHC22Q8N966 263 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 OR10A7Q8NGE5 316 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 OR10X1Q8NGY0 326 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 OR9G1Q8NH87 305 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 SSMEM1Q8WWF3 244 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 TMEM158Q8WZ71 300 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 SLC25A46Q96AG3 418 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 OR2S2Q9NQN1 319 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 ABCB10Q9NRK6 738 aa9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 TBL2Q9Y4P3 447 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-210ENST00000509454 FOXI3A8MTJ6 420 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 RAB27BO00194 218 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 IGHV4-59P01825 116 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 CEACAM3P40198 252 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 SCAND1P57086 179 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 ARL6IP1Q15041 203 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 CDNFQ49AH0 187 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 UTF1Q5T230 341 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 C5orf24Q7Z6I8 188 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 IZUMO1Q8IYV9 350 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 GAPTQ8N292 157 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 GALMQ96C23 342 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 SSX3Q99909 188 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 DIABLOQ9NR28 239 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 GFOD1Q9NXC2 390 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 ZNRD1Q9P1U0 126 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 COMMD3Q9UBI1 195 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 SPATA2Q9UM82 520 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 AMMECR1Q9Y4X0 333 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 MXRA5Q9NR99 2828 aa9.27□□□□□ -0.93
LIMCH1-210ENST00000509454 SVEP1Q4LDE5 3571 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 TRAV18A0A075B6X5 111 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 SERPINE3A8MV23 424 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 LEUTXA8MZ59 168 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 H3BUX3 64 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 J3QR06 171 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 TMEM127O75204 238 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 NAPSAO96009 420 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 CRYBA1P05813 215 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 CD34P28906 385 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 GNG2P59768 71 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 LY6EQ16553 131 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 LRRC75BQ2VPJ9 315 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 HLA-DRB5Q30154 266 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 UBE2NLQ5JXB2 153 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 MINOS1Q5TGZ0 78 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 DTX3Q8N9I9 347 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 BEND2Q8NDZ0 799 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 OR52L2PQ8NGH6 319 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 OR4P4Q8NGL7 312 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 RAB2BQ8WUD1 216 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 MAFIPQ8WZ33 124 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 RPEQ96AT9 228 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 CREB3L1Q96BA8 519 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 SLC25A38Q96DW6 304 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 MALSU1Q96EH3 234 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 MMP28Q9H239 520 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 LINC00574Q9H8X3 128 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 MBNL3Q9NUK0 354 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 DPM3Q9P2X0 92 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 MGAT4AQ9UM21 535 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 PSG11Q9UQ72 335 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 MINOS1-NBL1R4GNA1 71 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 A0A087X0M5 115 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 A0A1B0GX30 115 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 TMEM235A6NFC5 223 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 F2RL2O00254 374 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 MFNGO00587 321 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 HSPA12AO43301 675 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 RGS11O94810 467 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 SOX6P35712 828 aa9.26□□□□□ -0.93
LIMCH1-210ENST00000509454 PPP1CCP36873 323 aaKnown RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms