RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 PRR25Q96S07 402 aa16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 ZNF107Q9UII5 783 aaPredicted RBP16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 LSM4Q9Y4Z0 139 aaKnown RBP16.51■□□□□ 0.23
SQSTM1-210ENST00000506042 EI24O14681 340 aa16.5■□□□□ 0.23
SQSTM1-210ENST00000506042 CA11O75493 328 aa16.5■□□□□ 0.23
SQSTM1-210ENST00000506042 BDKRB2P30411 391 aa16.5■□□□□ 0.23
SQSTM1-210ENST00000506042 DEFB136Q30KP8 78 aa16.5■□□□□ 0.23
SQSTM1-210ENST00000506042 Q8N6K4 173 aa16.5■□□□□ 0.23
SQSTM1-210ENST00000506042 GHITMQ9H3K2 345 aa16.5■□□□□ 0.23
SQSTM1-210ENST00000506042 TAS2R4Q9NYW5 299 aa16.5■□□□□ 0.23
SQSTM1-210ENST00000506042 KCNIP1Q9NZI2 227 aa16.5■□□□□ 0.23
SQSTM1-210ENST00000506042 IGF1P05019 195 aa16.49■□□□□ 0.23
SQSTM1-210ENST00000506042 ZIK1Q3SY52 487 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-210ENST00000506042 ZNF529Q6P280 563 aa16.49■□□□□ 0.23
SQSTM1-210ENST00000506042 ZNF429Q86V71 674 aa16.49■□□□□ 0.23
SQSTM1-210ENST00000506042 OR11H1Q8NG94 326 aa16.49■□□□□ 0.23
SQSTM1-210ENST00000506042 UBE2E2Q96LR5 201 aa16.49■□□□□ 0.23
SQSTM1-210ENST00000506042 ISG20L2Q9H9L3 353 aaKnown RBP16.49■□□□□ 0.23
SQSTM1-210ENST00000506042 VSIG4Q9Y279 399 aa16.49■□□□□ 0.23
SQSTM1-210ENST00000506042 NBEAL2Q6ZNJ1 2754 aa16.49■□□□□ 0.23
SQSTM1-210ENST00000506042 GEMIN2O14893 280 aaKnown RBP16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 CDRT1O95170 752 aa16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 ZNF616Q08AN1 781 aa16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 RIPK1Q13546 671 aa16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 MMDQ15546 238 aa16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 UTF1Q5T230 341 aa16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 SLC25A48Q6ZT89 311 aaKnown RBP16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 CCDC107Q8WV48 283 aa16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 KCTD7Q96MP8 289 aa16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 C9orf16Q9BUW7 83 aa16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 KIAA1456Q9P272 454 aa16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 COL7A1Q02388 2944 aa16.48■□□□□ 0.23
SQSTM1-210ENST00000506042 TRAV39A0A0B4J263 110 aa16.47■□□□□ 0.23
SQSTM1-210ENST00000506042 RGS11O94810 467 aa16.47■□□□□ 0.23
SQSTM1-210ENST00000506042 MYL12AP19105 171 aa16.47■□□□□ 0.23
SQSTM1-210ENST00000506042 ZNF137PP52743 207 aa16.47■□□□□ 0.23
SQSTM1-210ENST00000506042 SLC22A6Q4U2R8 563 aa16.47■□□□□ 0.23
SQSTM1-210ENST00000506042 ZNF497Q6ZNH5 498 aa16.47■□□□□ 0.23
SQSTM1-210ENST00000506042 FAM71E2Q8N5Q1 922 aa16.47■□□□□ 0.23
SQSTM1-210ENST00000506042 ZNF251Q9BRH9 671 aa16.47■□□□□ 0.23
SQSTM1-210ENST00000506042 CST11Q9H112 138 aa16.47■□□□□ 0.23
SQSTM1-210ENST00000506042 ZMAT4Q9H898 229 aa16.47■□□□□ 0.23
SQSTM1-210ENST00000506042 PALMDQ9NP74 551 aa16.47■□□□□ 0.23
SQSTM1-210ENST00000506042 C15orf65H3BRN8 121 aa16.46■□□□□ 0.23
SQSTM1-210ENST00000506042 LANCL1O43813 399 aa16.46■□□□□ 0.23
SQSTM1-210ENST00000506042 MT-ND4P03905 459 aa16.46■□□□□ 0.23
SQSTM1-210ENST00000506042 PSMB8P28062 276 aa16.46■□□□□ 0.23
SQSTM1-210ENST00000506042 FHL3Q13643 280 aa16.46■□□□□ 0.23
SQSTM1-210ENST00000506042 ZNF554Q86TJ5 538 aa16.46■□□□□ 0.23
SQSTM1-210ENST00000506042 TMEM104Q8NE00 496 aa16.46■□□□□ 0.23
SQSTM1-210ENST00000506042 OR1N2Q8NGR9 330 aa16.46■□□□□ 0.23
SQSTM1-210ENST00000506042 ST6GALNAC6Q969X2 333 aa16.46■□□□□ 0.23
SQSTM1-210ENST00000506042 ETAA1Q9NY74 926 aa16.46■□□□□ 0.23
SQSTM1-210ENST00000506042 MRPS28Q9Y2Q9 187 aaKnown RBP16.46■□□□□ 0.23
SQSTM1-210ENST00000506042 IGHV3-43A0A0B4J1X8 118 aa16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 LINC01548A6NM66 108 aa16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 IGHV3-43DP0DP04 118 aa16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 CD40LGP29965 261 aa16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 DOC2BQ14184 412 aa16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 SYT6Q5T7P8 510 aaPredicted RBP16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 PRR18Q8N4B5 295 aa16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 OR52I1Q8NGK6 324 aa16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 PYDC1Q8WXC3 89 aa16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 THRSPQ92748 146 aa16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 ZNF184Q99676 751 aaPredicted RBP16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 OR51J1Q9H342 316 aa16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 LRRC42Q9Y546 428 aa16.45■□□□□ 0.22
SQSTM1-210ENST00000506042 TENM3Q9P273 2699 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 FAM90A10PA6NDY2 464 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 FAM90A7PA6NKC0 464 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 FAM90A23PA8MXZ1 464 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 GLAP06280 429 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 DCKP27707 260 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 RUNX1Q01196 453 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 CBR4Q8N4T8 237 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 ZNF555Q8NEP9 628 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 OR6Q1Q8NGQ2 317 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 RHOXF1Q8NHV9 184 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 MUC7Q8TAX7 377 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 AMBNQ9NP70 447 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 OR2S2Q9NQN1 319 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 PLSCR3Q9NRY6 295 aa16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 MRPS18AQ9NVS2 196 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-210ENST00000506042 E9PI62 339 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 OVOL1O14753 267 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 MYF6P23409 242 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 CFHR3Q02985 330 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 LSAMPQ13449 338 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 RAB12Q6IQ22 244 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 TCTEX1D1Q8N7M0 179 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 SMIM19Q96E16 107 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 ASCL2Q99929 193 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 HSPB9Q9BQS6 159 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 PARP11Q9NR21 331 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 SCOCQ9UIL1 159 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 RNF150Q9ULK6 438 aa16.43■□□□□ 0.22
SQSTM1-210ENST00000506042 C12orf77C9JDV5 145 aa16.42■□□□□ 0.22
SQSTM1-210ENST00000506042 ARPC1BO15143 372 aaKnown RBP16.42■□□□□ 0.22
SQSTM1-210ENST00000506042 SAP30O75446 220 aa16.42■□□□□ 0.22
SQSTM1-210ENST00000506042 HLA-DRB1P01911 266 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms