RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 PAX5Q02548 391 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 MLLT11Q13015 90 aaPredicted RBP11.4□□□□□ -0.58
HOXC9-202ENST00000504557 TPBGQ13641 420 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 C11orf88Q6PI97 169 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 TMEM91Q6ZNR0 172 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 DTX3Q8N9I9 347 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 SETD6Q8TBK2 473 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 PHYHIPQ92561 330 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 AKR1E2Q96JD6 320 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 NEDD4LQ96PU5 975 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 NICN1Q9BSH3 213 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 MMP27Q9H306 513 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 RAB26Q9ULW5 256 aa11.4□□□□□ -0.58
HOXC9-202ENST00000504557 A0A1W2PRX2 142 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 CCRL2O00421 344 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 SLC31A2O15432 143 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 ORC5O43913 435 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 SC5DO75845 299 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 OR2F2O95006 317 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 HBZP02008 142 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 UBBP0CG47 229 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 FAM106CPP0CH98 169 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 TMEM11P17152 192 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 CLDN12P56749 244 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 UNC119Q13432 240 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 C1orf100Q5SVJ3 147 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 C6orf183Q5T699 404 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 C6orf201Q7Z4U5 140 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 OR10A7Q8NGE5 316 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 RBMXL1Q96E39 390 aaKnown RBP11.39□□□□□ -0.59
HOXC9-202ENST00000504557 RBM14Q96PK6 669 aaKnown RBP11.39□□□□□ -0.59
HOXC9-202ENST00000504557 SULT4A1Q9BR01 284 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 FAAP24Q9BTP7 215 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 LINC00574Q9H8X3 128 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 LIN7BQ9HAP6 207 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 CHMP1AQ9HD42 196 aaPredicted RBP11.39□□□□□ -0.59
HOXC9-202ENST00000504557 GFOD1Q9NXC2 390 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 KCNIP1Q9NZI2 227 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 GHRLQ9UBU3 117 aa11.39□□□□□ -0.59
HOXC9-202ENST00000504557 CMYA5Q8N3K9 4069 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 PLXNB1O43157 2135 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 A0A1W2PPI3 338 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A10PA6NDY2 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A18PA6NE21 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A16PA6NEW6 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A20PA6NIJ5 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A7PA6NKC0 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A12PA8MX19 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A5PA8MXJ8 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A23PA8MXZ1 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 OOSP1A8MZH6 123 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 ARL6IP5O75915 188 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 IGKV1D-33P01593 117 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 IGKV1-33P01594 117 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A15PP0C7V4 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A13PP0C7W8 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A14PP0C7W9 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 FAM90A24PP0C7X0 464 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 LOXL3P58215 753 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 RPS27AP62979 156 aaKnown RBP11.38□□□□□ -0.59
HOXC9-202ENST00000504557 TRAM1Q15629 374 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 RAB11BQ15907 218 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 ZNF367Q7RTV3 350 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 C1QL4Q86Z23 238 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 Q8N2B8 174 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 OR6M1Q8NGM8 313 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 KCNG3Q8TAE7 436 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 GFI1Q99684 422 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 TAF9BQ9HBM6 251 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 ISYNA1Q9NPH2 558 aa11.38□□□□□ -0.59
HOXC9-202ENST00000504557 SLC22A1O15245 554 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 ARSBP15848 533 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 PSMA1P25786 263 aaKnown RBP11.37□□□□□ -0.59
HOXC9-202ENST00000504557 IL3RAP26951 378 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 CHATP28329 748 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 BLVRBP30043 206 aaPredicted RBP11.37□□□□□ -0.59
HOXC9-202ENST00000504557 RAB7AP51149 207 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 DEFA6Q01524 100 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 GNMTQ14749 295 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 TBCEQ15813 527 aaPredicted RBP11.37□□□□□ -0.59
HOXC9-202ENST00000504557 KHDC1LQ5JSQ8 128 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 HES5Q5TA89 166 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 C16orf82Q7Z2V1 217 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 CENPVQ7Z7K6 275 aaPredicted RBP11.37□□□□□ -0.59
HOXC9-202ENST00000504557 OR52L2PQ8NGH6 319 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 MRPL30Q8TCC3 161 aaKnown RBP11.37□□□□□ -0.59
HOXC9-202ENST00000504557 CITED2Q99967 270 aaPredicted RBP11.37□□□□□ -0.59
HOXC9-202ENST00000504557 Q9H521 79 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 RAB9BQ9NP90 201 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 ACOT13Q9NPJ3 140 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 OR2S2Q9NQN1 319 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 PLEKHJ1Q9NW61 149 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 MOB4Q9Y3A3 225 aa11.37□□□□□ -0.59
HOXC9-202ENST00000504557 VWFP04275 2813 aa11.36□□□□□ -0.59
HOXC9-202ENST00000504557 IGHV1-3A0A0C4DH29 117 aa11.36□□□□□ -0.59
HOXC9-202ENST00000504557 BPNT1O95861 308 aa11.36□□□□□ -0.59
HOXC9-202ENST00000504557 GAPDHP04406 335 aaKnown RBP11.36□□□□□ -0.59
HOXC9-202ENST00000504557 EMX1Q04741 257 aaPredicted RBP11.36□□□□□ -0.59
HOXC9-202ENST00000504557 SSX1Q16384 188 aa11.36□□□□□ -0.59
HOXC9-202ENST00000504557 SLC16A12Q6ZSM3 486 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms