RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 S1PR3Q99500 378 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 RASL11BQ9BPW5 248 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 TMEM138Q9NPI0 162 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 RPL36Q9Y3U8 105 aaKnown RBP9.7□□□□□ -0.86
CPSF3-204ENST00000489403 U3KQK5 164 aa9.7□□□□□ -0.86
CPSF3-204ENST00000489403 AIPO00170 330 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 DYNC1I1O14576 645 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 RRP9O43818 475 aaKnown RBP9.69□□□□□ -0.86
CPSF3-204ENST00000489403 IGHG4P01861 327 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 MT-ND4P03905 459 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 BDKRB2P30411 391 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 ECI1P42126 302 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF137PP52743 207 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 F2RL1P55085 397 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 PPP3R1P63098 170 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 FHL3Q13643 280 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 Q3ZCU0 254 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 RPL22L1Q6P5R6 122 aaKnown RBP9.69□□□□□ -0.86
CPSF3-204ENST00000489403 SLC25A48Q6ZT89 311 aaKnown RBP9.69□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF439Q8NDP4 499 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 OR13C5Q8NGS8 318 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 NEK7Q8TDX7 302 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 C4orf3Q8WVX3 66 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 S100A13Q99584 98 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 SCOCQ9UIL1 159 aa9.69□□□□□ -0.86
CPSF3-204ENST00000489403 SIRT4Q9Y6E7 314 aaPredicted RBP9.69□□□□□ -0.86
CPSF3-204ENST00000489403 LOC100130705A0A1B0GUX0 176 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 MAGEA13PA6NCF6 341 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 SEC14L6B5MCN3 397 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 C12orf77C9JDV5 145 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 TXNL1O43396 289 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 IGFBP3P17936 291 aaPredicted RBP9.68□□□□□ -0.86
CPSF3-204ENST00000489403 VDAC1P21796 283 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 PSMB8P28062 276 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 VHLP40337 213 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 ETV1P50549 477 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF134P52741 427 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 SMN1Q16637 294 aaKnown RBP9.68□□□□□ -0.86
CPSF3-204ENST00000489403 SLC22A6Q4U2R8 563 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 CCDC58Q4VC31 144 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 OR2G6Q5TZ20 316 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 ZFP1Q6P2D0 407 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 OR8H1Q8NGG4 311 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 KCTD7Q96MP8 289 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF184Q99676 751 aaPredicted RBP9.68□□□□□ -0.86
CPSF3-204ENST00000489403 SLC29A1Q99808 456 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 ASCL2Q99929 193 aa9.68□□□□□ -0.86
CPSF3-204ENST00000489403 FGF20Q9NP95 211 aaPredicted RBP9.68□□□□□ -0.86
CPSF3-204ENST00000489403 PAK1IP1Q9NWT1 392 aaPredicted RBP9.68□□□□□ -0.86
CPSF3-204ENST00000489403 RCC2Q9P258 522 aaKnown RBP9.68□□□□□ -0.86
CPSF3-204ENST00000489403 HUWE1Q7Z6Z7 4374 aaKnown RBP9.68□□□□□ -0.86
CPSF3-204ENST00000489403 DNAH7Q8WXX0 4024 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF780AO75290 641 aaPredicted RBP9.67□□□□□ -0.86
CPSF3-204ENST00000489403 IGF1P05019 195 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 GTF2F2P13984 249 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 SOX6P35712 828 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 RIPK1Q13546 671 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF260Q3ZCT1 412 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 CT45A1Q5HYN5 189 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 SYT6Q5T7P8 510 aaPredicted RBP9.67□□□□□ -0.86
CPSF3-204ENST00000489403 PRR18Q8N4B5 295 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 STX19Q8N4C7 294 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 OR11H1Q8NG94 326 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 OR10V1Q8NGI7 309 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 OR4K15Q8NH41 348 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 CT45A3Q8NHU0 189 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 MYOZ3Q8TDC0 251 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 SMIM19Q96E16 107 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 C9orf16Q9BUW7 83 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 ETAA1Q9NY74 926 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF107Q9UII5 783 aaPredicted RBP9.67□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF580Q9UK33 172 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 TRAPPC2LQ9UL33 140 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 TENM3Q9P273 2699 aa9.67□□□□□ -0.86
CPSF3-204ENST00000489403 TRBV5-5A0A0J9YX44 114 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 MCRIP1C9JLW8 97 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 OGG1O15527 345 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 SPINT2O43291 252 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 WBP4O75554 376 aaKnown RBP9.66□□□□□ -0.86
CPSF3-204ENST00000489403 LALBAP00709 142 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 HBZP02008 142 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 SLC2A2P11168 524 aaPredicted RBP9.66□□□□□ -0.86
CPSF3-204ENST00000489403 MYF6P23409 242 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 PPIFP30405 207 aaKnown RBP9.66□□□□□ -0.86
CPSF3-204ENST00000489403 LSAMPQ13449 338 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 TMEM30BQ3MIR4 351 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 ASPHD1Q5U4P2 390 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 GAPTQ8N292 157 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 OR1L1Q8NH94 360 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 CYYR1Q96J86 154 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 GNB4Q9HAV0 340 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 SPACA1Q9HBV2 294 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 GNG12Q9UBI6 72 aa9.66□□□□□ -0.86
CPSF3-204ENST00000489403 ZNF256Q9Y2P7 627 aaPredicted RBP9.66□□□□□ -0.86
CPSF3-204ENST00000489403 TRAV8-7A0A075B6U6 113 aa9.65□□□□□ -0.86
CPSF3-204ENST00000489403 I3L521 148 aa9.65□□□□□ -0.86
CPSF3-204ENST00000489403 LANCL1O43813 399 aa9.65□□□□□ -0.86
CPSF3-204ENST00000489403 OR5H8P0DN80 308 aa9.65□□□□□ -0.86
CPSF3-204ENST00000489403 RCC1P18754 421 aaPredicted RBP9.65□□□□□ -0.86
CPSF3-204ENST00000489403 FSTP19883 344 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms