RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 DNAJB11Q9UBS4 358 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 TRAPPC2LQ9UL33 140 aa11.86□□□□□ -0.51
CUX1-209ENST00000487284 HECTD1Q9ULT8 2610 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 CRYM-AS1A6NIL9 109 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 BET1O15155 118 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 TFF1P04155 84 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 TNFRSF1AP19438 455 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 DNASE1P24855 282 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 PPOXP50336 477 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 C11orf88Q6PI97 169 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 BOLLQ8N9W6 283 aaKnown RBP11.85□□□□□ -0.51
CUX1-209ENST00000487284 OR11H4Q8NGC9 324 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 OR5T2Q8NGG2 359 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 C14orf79Q96F83 325 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 WDR89Q96FK6 387 aaPredicted RBP11.85□□□□□ -0.51
CUX1-209ENST00000487284 SHARPINQ9H0F6 387 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 KIF25Q9UIL4 384 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 PPP1R3CQ9UQK1 317 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 USF3Q68DE3 2245 aa11.85□□□□□ -0.51
CUX1-209ENST00000487284 RGS11O94810 467 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 CD80P33681 288 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 SLC9A3R2Q15599 337 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 LIN54Q6MZP7 749 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 SGPP2Q8IWX5 399 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 H1FOOQ8IZA3 346 aaPredicted RBP11.84□□□□□ -0.51
CUX1-209ENST00000487284 ANGPTL6Q8NI99 470 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 MARVELD3Q96A59 401 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 SAP30LQ9HAJ7 183 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 SLC2A9Q9NRM0 540 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 POLQO75417 2590 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 IGHV3OR15-7A0A075B7D8 119 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 TRAV39A0A0B4J263 110 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 CDKN1AP38936 164 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 PIGPP57054 158 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 AESQ08117 197 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 ANKRD55Q3KP44 614 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 ABCA11PQ4W5N1 156 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 Q5BKY6 102 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 STUMQ69YW2 141 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 ZNF787Q6DD87 383 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 LAMTOR1Q6IAA8 161 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 C9orf62Q8N4C0 152 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 ASCC1Q8N9N2 400 aaKnown RBP11.84□□□□□ -0.51
CUX1-209ENST00000487284 OR10J5Q8NHC4 309 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 COQ8AQ8NI60 647 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 KIRREL1Q96J84 757 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 SNX22Q96L94 193 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 EGLN1Q9GZT9 426 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 TAF9BQ9HBM6 251 aa11.84□□□□□ -0.51
CUX1-209ENST00000487284 FBXO9Q9UK97 447 aaPredicted RBP11.84□□□□□ -0.51
CUX1-209ENST00000487284 OOEPA6NGQ2 149 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 CYB5R3P00387 301 aaPredicted RBP11.83□□□□□ -0.52
CUX1-209ENST00000487284 IFNA2P01563 188 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 IRF2P14316 349 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 KRBOX4Q5JUW0 171 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 FAM201AQ5SY85 155 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 TEX36Q5VZQ5 186 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 KCTD9Q7L273 389 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 TGIF2LYQ8IUE0 185 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 FAM185AQ8N0U4 392 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 CCDC71LQ8N9Z2 235 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 ZBTB8BQ8NAP8 495 aaPredicted RBP11.83□□□□□ -0.52
CUX1-209ENST00000487284 PPP1R35Q8TAP8 253 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 IGFBPL1Q8WX77 278 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 NRGNQ92686 78 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 GALNT14Q96FL9 552 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 NAA60Q9H7X0 242 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 RAB18Q9NP72 206 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 KCNIP1Q9NZI2 227 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 OR2W1Q9Y3N9 320 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 APCP25054 2843 aa11.83□□□□□ -0.52
CUX1-209ENST00000487284 UNC79Q9P2D8 2635 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 IGKV1D-13A0A0B4J2D9 117 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 TEX13DA0A0J9YY54 714 aaPredicted RBP11.82□□□□□ -0.52
CUX1-209ENST00000487284 K7N7A8 449 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 CCSO14618 274 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 MGST3O14880 152 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 IGKV1-13P0DP09 117 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 MUC1P15941 1255 aaPredicted RBP11.82□□□□□ -0.52
CUX1-209ENST00000487284 SSTR2P30874 369 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 GNRHRP30968 328 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 GABRA2P47869 451 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 GLIPR1P48060 266 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 RND3P61587 244 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 PHLDA2Q53GA4 152 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 C6orf183Q5T699 404 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 LDLRAD3Q86YD5 345 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 RTN4IP1Q8WWV3 396 aaPredicted RBP11.82□□□□□ -0.52
CUX1-209ENST00000487284 SDSLQ96GA7 329 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 RAB1BQ9H0U4 201 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 PLSCR3Q9NRY6 295 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 OR1A1Q9P1Q5 309 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 BOLA1Q9Y3E2 137 aa11.82□□□□□ -0.52
CUX1-209ENST00000487284 LRRC30A6NM36 301 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 C12orf77C9JDV5 145 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 HEXAP06865 529 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 KRTAP10-9P60411 292 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 TRAT1Q6PIZ9 186 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 ZNF561Q8N587 486 aa11.81□□□□□ -0.52
CUX1-209ENST00000487284 ZNF565Q8N9K5 539 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 256.1 ms