RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 FAM162BQ5T6X4 162 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 CLEC20AQ6ZU45 233 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 FAM183BPQ6ZVS7 135 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 ZNRF2Q8NHG8 242 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 LGALS14Q8TCE9 139 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 MITD1Q8WV92 249 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 CIDECQ96AQ7 238 aaPredicted RBP0.73□□□□□ -2.29
VPS50-217ENST00000485140 GALMQ96C23 342 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 FAAP24Q9BTP7 215 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 MND1Q9BWT6 205 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 HAUS4Q9H6D7 363 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 CRLF2Q9HC73 371 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 SCML1Q9UN30 329 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 TBL2Q9Y4P3 447 aaKnown RBP0.73□□□□□ -2.29
VPS50-217ENST00000485140 PUS1Q9Y606 427 aaKnown RBP eCLIP0.73□□□□□ -2.29
VPS50-217ENST00000485140 BZW2Q9Y6E2 419 aaKnown RBP0.73□□□□□ -2.29
VPS50-217ENST00000485140 USH1CQ9Y6N9 552 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 MINOS1-NBL1R4GNA1 71 aa0.73□□□□□ -2.29
VPS50-217ENST00000485140 RTEL1-TNFRSF6BF6WH68 1400 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 TRGV2A0A075B6R0 118 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 B4DEV8 164 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 BOLA2-SMG1P6H3BVE0 249 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 hCG_2039718K7EN88 272 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 CYTH3O43739 400 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 SC5DO75845 299 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 IGKV5-2P06315 115 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 CRYGCP07315 174 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 ATF1P18846 271 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 PSMA1P25786 263 aaKnown RBP0.72□□□□□ -2.29
VPS50-217ENST00000485140 TSPOP30536 169 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 UGT2B10P36537 528 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 CD200P41217 278 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 GABARAPL2P60520 117 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 HES1Q14469 280 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 PAFAH1B3Q15102 231 aaKnown RBP0.72□□□□□ -2.29
VPS50-217ENST00000485140 TRAM1Q15629 374 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 HNRNPA1L2Q32P51 320 aaKnown RBP0.72□□□□□ -2.29
VPS50-217ENST00000485140 C6orf183Q5T699 404 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 FAM19A1Q7Z5A9 133 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 ZFAND2AQ8N6M9 145 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 ASCC1Q8N9N2 400 aaKnown RBP0.72□□□□□ -2.29
VPS50-217ENST00000485140 OR4X2Q8NGF9 303 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 OR10A6Q8NH74 314 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 C16orf78Q8WTQ4 265 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 IFT81Q8WYA0 676 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 GPR22Q99680 433 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 MGLLQ99685 303 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 NAA38Q9BRA0 125 aaKnown RBP0.72□□□□□ -2.29
VPS50-217ENST00000485140 Q9BRP9 147 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 TMBIM4Q9HC24 238 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 DOK5Q9P104 306 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 ALG5Q9Y673 324 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 TENM3Q9P273 2699 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 MDC1Q14676 2089 aaKnown RBP0.72□□□□□ -2.29
VPS50-217ENST00000485140 TRPM6Q9BX84 2022 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 PXDNLA1KZ92 1463 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 CRB1P82279 1406 aa0.72□□□□□ -2.29
VPS50-217ENST00000485140 CACNA1SQ13698 1873 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 COL18A1P39060 1754 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 DHRS12A0PJE2 317 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 VPS37CA5D8V6 355 aaPredicted RBP0.71□□□□□ -2.3
VPS50-217ENST00000485140 ARRDC5A6NEK1 342 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 H3BSA7 217 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 FABP7O15540 132 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 CRXO43186 299 aaPredicted RBP0.71□□□□□ -2.3
VPS50-217ENST00000485140 ZMPSTE24O75844 475 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 NAPSAO96009 420 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 OTCP00480 354 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 PTNP21246 168 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 SLC35A2P78381 396 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 PDK2Q15119 407 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 ZBTB6Q15916 424 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 TRIML2Q8N7C3 387 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 ZNF321PQ8N8H1 164 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 OR9I1Q8NGQ6 314 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 LHFPL5Q8TAF8 219 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 MRPL32Q9BYC8 188 aaKnown RBP0.71□□□□□ -2.3
VPS50-217ENST00000485140 XKR8Q9H6D3 395 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 RMND1Q9NWS8 449 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 STMN3Q9NZ72 180 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 RABL2AQ9UBK7 228 aaPredicted RBP0.71□□□□□ -2.3
VPS50-217ENST00000485140 KIF27Q86VH2 1401 aa0.71□□□□□ -2.3
VPS50-217ENST00000485140 IGHV3-15A0A0B4J1V0 119 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 IGHV3-73A0A0B4J1V6 119 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 IGKV1-12A0A0C4DH73 117 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 A0A0G2JQZ4 141 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 GRIFINA4D1Z8 144 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 H3BPC8 53 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 J3QQQ9 107 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 UBFD1O14562 309 aaKnown RBP0.7□□□□□ -2.3
VPS50-217ENST00000485140 IGKV1D-12P01611 117 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 IGHV3-30-3P0DP02 117 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 SLC25A16P16260 332 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 ALOX5APP20292 161 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 RCVRNP35243 200 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 PPP1CCP36873 323 aaKnown RBP0.7□□□□□ -2.3
VPS50-217ENST00000485140 C1QTNF8P60827 252 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 RPL26P61254 145 aaKnown RBP0.7□□□□□ -2.3
VPS50-217ENST00000485140 SKP2Q13309 424 aa0.7□□□□□ -2.3
VPS50-217ENST00000485140 FAM229BQ4G0N7 80 aa0.7□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms