RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 IGHV2-26A0A0B4J1V2 119 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 hCG_1809904A0A1W2PP81 198 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 A0A1W2PPE2 198 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 A0A1W2PR64 198 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 A0A1W2PRV1 198 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 OCMP0CE72 109 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-202ENST00000394943 GABRA2P47869 451 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 LCN2P80188 198 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 HLA-DRB5Q30154 266 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 DCAF12L2Q5VW00 463 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 LYSMD2Q8IV50 215 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF565Q8N9K5 539 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 PIFOQ8TCI5 191 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 MALSU1Q96EH3 234 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 SPTAN1Q13813 2472 aaKnown RBP5.69□□□□□ -1.5
LIMA1-202ENST00000394943 RTTNQ86VV8 2226 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 MMP23AO75900 390 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 OR7C1O76099 320 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-202ENST00000394943 TOX4O94842 621 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF735P0CB33 412 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 FAM157CP0CG43 387 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF44P15621 663 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 TNFSF8P32971 234 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 RIPPLY3P57055 190 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF45Q02386 682 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 SCGB2A2Q13296 93 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 LDLRAD2Q5SZI1 272 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 TMEM185AQ8NFB2 350 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 OR13D1Q8NGV5 346 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 SRRQ9GZT4 340 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 ATG5Q9H1Y0 275 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 HEXA-AS1Q9H8Q6 139 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF286AQ9HBT8 521 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 PLEKHJ1Q9NW61 149 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 PHF1O43189 567 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-202ENST00000394943 NOL3O60936 208 aaKnown RBP5.69□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF205O95201 554 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 HBZP02008 142 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 IL6RP08887 468 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-202ENST00000394943 MECP2P51608 486 aaKnown RBP5.69□□□□□ -1.5
LIMA1-202ENST00000394943 CLEC9AQ6UXN8 241 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 LAX1Q8IWV1 398 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 WIPF2Q8TF74 440 aaPredicted RBP5.69□□□□□ -1.5
LIMA1-202ENST00000394943 DDB2Q92466 427 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 ABHD1Q96SE0 405 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 IFI27L2Q9H2X8 130 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 ZNRD1Q9P1U0 126 aa5.69□□□□□ -1.5
LIMA1-202ENST00000394943 IGHV3-64DA0A0J9YX35 117 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 ANKRD20A5PA0PJZ0 165 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 J3QR06 171 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 GNB3P16520 340 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 GABRR1P24046 479 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 RAB7AP51149 207 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 CRIP2P52943 208 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-202ENST00000394943 RND3P61587 244 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 TAGLNQ01995 201 aaKnown RBP5.68□□□□□ -1.5
LIMA1-202ENST00000394943 MXD1Q05195 221 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 METTL11BQ5VVY1 283 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 C16orf82Q7Z2V1 217 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 SAMD12Q8N8I0 201 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 OR9G1Q8NH87 305 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 NANPQ8TBE9 248 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 RNF5Q99942 180 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 OR14J1Q9UGF5 321 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 ANXA10Q9UJ72 324 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 ISPDA4D126 451 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 BUB1B-PAK6H3BSN5 160 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 CTDSP2O14595 271 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 SLC22A5O76082 557 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 DUSP1P28562 367 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 CD40LGP29965 261 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 LSM3P62310 102 aaKnown RBP5.68□□□□□ -1.5
LIMA1-202ENST00000394943 BPIFB2Q8N4F0 458 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 GDPD1Q8N9F7 314 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 ZBTB34Q8NCN2 500 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 CLEC7AQ9BXN2 247 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 IGKV1D-8A0A087WSZ0 117 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 NPFFO15130 113 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 DYRK1AQ13627 763 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 KLF9Q13886 244 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-202ENST00000394943 ATXN7L3Q14CW9 347 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-202ENST00000394943 PRR18Q8N4B5 295 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 OR5AP2Q8NGF4 316 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF48Q96MX3 618 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-202ENST00000394943 CMSS1Q9BQ75 279 aaKnown RBP5.68□□□□□ -1.5
LIMA1-202ENST00000394943 MMP28Q9H239 520 aa5.68□□□□□ -1.5
LIMA1-202ENST00000394943 FASNP49327 2511 aaKnown RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 A0A1W2PPI3 338 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 BRI3O95415 125 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 CCL3L1P16619 93 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 COMPP49747 757 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 ZNF134P52741 427 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 HILS1P60008 231 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 CDK10Q15131 360 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 OR8H3Q8N146 312 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 MCFD2Q8NI22 146 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 CCDC32Q9BV29 185 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 GSX1Q9H4S2 264 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-202ENST00000394943 C16orf95Q9H693 158 aa5.67□□□□□ -1.5
LIMA1-202ENST00000394943 TAF9BQ9HBM6 251 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms