RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 TMEM41BQ5BJD5 291 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 MRGPRDQ8TDS7 321 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 OR51M1Q9H341 326 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 ASPMQ8IZT6 3477 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 TRAV34A0A0B4J273 112 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 KIAA1324LA8MWY0 1029 aaPredicted RBP10.28□□□□□ -0.76
USP1-201ENST00000339950 TIMM8AO60220 97 aaPredicted RBP10.28□□□□□ -0.76
USP1-201ENST00000339950 SPINK4O60575 86 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 TRGC2P03986 189 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 ZNF266Q14584 549 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 SURF2Q15527 256 aaPredicted RBP10.28□□□□□ -0.76
USP1-201ENST00000339950 WDR25Q64LD2 544 aaPredicted RBP10.28□□□□□ -0.76
USP1-201ENST00000339950 LHX4Q969G2 390 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 OR2J1Q9GZK6 312 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 SLC35B3Q9H1N7 401 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 ZNF665Q9H7R5 613 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 PSENENQ9NZ42 101 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 PRF1P14222 555 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 OR3A1P47881 315 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 Q3ZCU0 254 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 ETFRF1Q6IPR1 90 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 DNM1P46Q6ZS02 220 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 ADAMTS17Q8TE56 1095 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 HIST1H2BAQ96A08 127 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 C1orf147Q96MC9 270 aaPredicted RBP10.28□□□□□ -0.76
USP1-201ENST00000339950 IER2Q9BTL4 223 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 ZNF107Q9UII5 783 aaPredicted RBP10.28□□□□□ -0.76
USP1-201ENST00000339950 PTPRSQ13332 1948 aa10.28□□□□□ -0.76
USP1-201ENST00000339950 MGAQ8IWI9 3026 aa10.27□□□□□ -0.76
USP1-201ENST00000339950 KLF7O75840 302 aaPredicted RBP10.27□□□□□ -0.76
USP1-201ENST00000339950 IGLV3-19P01714 112 aa10.27□□□□□ -0.76
USP1-201ENST00000339950 ZNF25P17030 456 aaPredicted RBP10.27□□□□□ -0.76
USP1-201ENST00000339950 SRD5A2P31213 254 aa10.27□□□□□ -0.76
USP1-201ENST00000339950 DMBX1Q8NFW5 382 aa10.27□□□□□ -0.76
USP1-201ENST00000339950 GCM1Q9NP62 436 aa10.27□□□□□ -0.76
USP1-201ENST00000339950 ZGRF1Q86YA3 2104 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 IGF2RP11717 2491 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 LOC390937A0A1W2PQ73 354 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 TGOLN2O43493 480 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 IGHMP01871 453 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 H3F3AP84243 136 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 IL11RAQ14626 422 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 NUFIP2Q7Z417 695 aaKnown RBP10.27□□□□□ -0.77
USP1-201ENST00000339950 FAM103A1Q9BTL3 118 aaKnown RBP10.27□□□□□ -0.77
USP1-201ENST00000339950 RALYQ9UKM9 306 aaKnown RBP10.27□□□□□ -0.77
USP1-201ENST00000339950 NCOR2Q9Y618 2525 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 A0A1W2PNV4 684 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 H7BYZ3 331 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 CLN5O75503 358 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 IFNA1P01562 189 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 RBM11P57052 281 aaKnown RBP10.27□□□□□ -0.77
USP1-201ENST00000339950 SLC10A1Q14973 349 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 RSPO1Q2MKA7 263 aaPredicted RBP10.27□□□□□ -0.77
USP1-201ENST00000339950 ZNF787Q6DD87 383 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 TMEM252Q8N6L7 170 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 ADGRG7Q96K78 797 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 GGACTQ9BVM4 153 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 DOK5Q9P104 306 aa10.27□□□□□ -0.77
USP1-201ENST00000339950 IGSF23A1L1A6 192 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 CRYM-AS1A6NIL9 109 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 DVL1O14640 695 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 AESQ08117 197 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 GAMTQ14353 236 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 HES3Q5TGS1 186 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 C17orf82Q86X59 251 aaPredicted RBP10.26□□□□□ -0.77
USP1-201ENST00000339950 FAM58AQ8N1B3 248 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 SNIP1Q8TAD8 396 aaKnown RBP10.26□□□□□ -0.77
USP1-201ENST00000339950 PACRGQ96M98 296 aaPredicted RBP10.26□□□□□ -0.77
USP1-201ENST00000339950 WNT9BO14905 357 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 CELA3BP08861 270 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 TLE4Q04727 773 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 CLDN23Q96B33 292 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 SAT2Q96F10 170 aaPredicted RBP10.26□□□□□ -0.77
USP1-201ENST00000339950 AQP10Q96PS8 301 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 MYOZ1Q9NP98 299 aaPredicted RBP10.26□□□□□ -0.77
USP1-201ENST00000339950 CLEC18AA5D8T8 446 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 K7ESF4 209 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 CRYAAP02489 173 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 PRB4P10163 310 aaPredicted RBP10.26□□□□□ -0.77
USP1-201ENST00000339950 SULT1A2P50226 295 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 PMS2P11Q13670 270 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 PRAMEF6Q5VXH4 476 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 PMS2CLQ68D20 193 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 CLEC18CQ8NCF0 446 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 FAM210BQ96KR6 192 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 SMIM7Q9BQ49 75 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 SERTAD4Q9NUC0 356 aa10.26□□□□□ -0.77
USP1-201ENST00000339950 LOC102724200A0A096LPH7 203 aaPredicted RBP10.25□□□□□ -0.77
USP1-201ENST00000339950 FAM157CP0CG43 387 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 G6PCP35575 357 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 MPLP40238 635 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 MEOX1P50221 254 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 NAAAQ02083 359 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 OR4F5Q8NH21 305 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 LEAP2Q969E1 77 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 ABHD14BQ96IU4 210 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 OR4F4Q96R69 305 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 DCTN5Q9BTE1 182 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 ANGPTL4Q9BY76 406 aa10.25□□□□□ -0.77
USP1-201ENST00000339950 FOXJ2Q9P0K8 574 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms