RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 ZNF665Q9H7R5 613 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 GFOD1Q9NXC2 390 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 LY6G6EA0A0G2JKS1 128 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 SLC22A20A6NK97 555 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 C10orf142B7Z368 130 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 FAM157AC9JC47 383 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 PROB1E7EW31 1015 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 NTF4P34130 210 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 RPS16P62249 146 aaKnown RBP9.03□□□□□ -0.96
COL3A1-202ENST00000317840 OR8B8Q15620 311 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 OR4D5Q8NGN0 318 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 WDR54Q9H977 334 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 GLRX2Q9NS18 164 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 SLC39A9Q9NUM3 307 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 PSENENQ9NZ42 101 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 U3KQA8 63 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 DOCK11Q5JSL3 2073 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 CADP27708 2225 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 SIRPB1O00241 398 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 DEGS1O15121 323 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 SYNGR1O43759 233 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 IFNA1P01562 189 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 PSG2P11465 335 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 APLNRP35414 380 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 IDH3GP51553 393 aaPredicted RBP9.03□□□□□ -0.96
COL3A1-202ENST00000317840 MLF1P58340 268 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 HBG1P69891 147 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 HBG2P69892 147 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 ZNF385CQ66K41 422 aaPredicted RBP9.03□□□□□ -0.96
COL3A1-202ENST00000317840 OR1K1Q8NGR3 316 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 RPUSD4Q96CM3 377 aaKnown RBP9.03□□□□□ -0.96
COL3A1-202ENST00000317840 FAM210BQ96KR6 192 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 IMMP1LQ96LU5 166 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 ATP5SQ99766 215 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 GAB2Q9UQC2 676 aa9.03□□□□□ -0.96
COL3A1-202ENST00000317840 MED13Q9UHV7 2174 aa9.02□□□□□ -0.96
COL3A1-202ENST00000317840 NKX2-8O15522 239 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 SLC10A1Q14973 349 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 USF2Q15853 346 aaPredicted RBP9.02□□□□□ -0.97
COL3A1-202ENST00000317840 LHX4Q969G2 390 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 GPR61Q9BZJ8 451 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 KLRC4-KLRK1H3BQV0 150 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 KLF7O75840 302 aaPredicted RBP9.02□□□□□ -0.97
COL3A1-202ENST00000317840 NGFP01138 241 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 PMP22Q01453 160 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 HIKESHIQ53FT3 197 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 PPP1R32Q7Z5V6 425 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 CPEB3Q8NE35 698 aaKnown RBP9.02□□□□□ -0.97
COL3A1-202ENST00000317840 M1APQ8TC57 530 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 TECTBQ96PL2 329 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 DECR2Q9NUI1 292 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 RNF150Q9ULK6 438 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 CFAP54Q96N23 3096 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 SRP19P09132 144 aaKnown RBP9.02□□□□□ -0.97
COL3A1-202ENST00000317840 F2RP25116 425 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 HIST1H3AP68431 136 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 BAXQ07812 192 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 IL24Q13007 206 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 DCAF10Q5QP82 559 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 TUSC5Q8IXB3 177 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 ZNF383Q8NA42 475 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 LYPD6BQ8NI32 183 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 Q8WTZ3 238 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 Q9N2K0 584 aa9.02□□□□□ -0.97
COL3A1-202ENST00000317840 HOXB1P14653 301 aaPredicted RBP9.01□□□□□ -0.97
COL3A1-202ENST00000317840 PAX6P26367 422 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 TAS2R30P59541 319 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 ZNF880Q6PDB4 577 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 APOBEC3DQ96AK3 386 aaPredicted RBP9.01□□□□□ -0.97
COL3A1-202ENST00000317840 APH1AQ96BI3 265 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 SNX22Q96L94 193 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 HS3ST6Q96QI5 342 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 OR5B12Q96R08 314 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 SMIM7Q9BQ49 75 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 EGLN1Q9GZT9 426 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 ARV1Q9H2C2 271 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 SMDT1Q9H4I9 107 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 UBE2L5PA0A1B0GUS4 154 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 PGLYRP1O75594 196 aaPredicted RBP9.01□□□□□ -0.97
COL3A1-202ENST00000317840 CELA3AP09093 270 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 CA6P23280 308 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 FGF12P61328 243 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 HEPN1Q6WQI6 88 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 ZNF709Q8N972 641 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 CPAMD8Q8IZJ3 1885 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 SMCO3A2RU48 225 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 CLDN34H7C241 214 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 UBE2NP61088 152 aaKnown RBP9.01□□□□□ -0.97
COL3A1-202ENST00000317840 RNF138Q8WVD3 245 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 PRO1933Q9H354 126 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 PRO3102Q9H379 93 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 RPRMQ9NS64 109 aa9.01□□□□□ -0.97
COL3A1-202ENST00000317840 ZNF716A6NP11 495 aa9□□□□□ -0.97
COL3A1-202ENST00000317840 ZNF705GA8MUZ8 300 aaPredicted RBP9□□□□□ -0.97
COL3A1-202ENST00000317840 SYNGR2O43760 224 aa9□□□□□ -0.97
COL3A1-202ENST00000317840 KRASP01116 189 aa9□□□□□ -0.97
COL3A1-202ENST00000317840 CXCL1P09341 107 aa9□□□□□ -0.97
COL3A1-202ENST00000317840 MMP9P14780 707 aa9□□□□□ -0.97
COL3A1-202ENST00000317840 FOXO1Q12778 655 aa9□□□□□ -0.97
COL3A1-202ENST00000317840 CLN3Q13286 438 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms