RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 P4HTMQ9NXG6 502 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 ONECUT1Q9UBC0 465 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 SLC35E4Q6ICL7 350 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 OR4C12Q96R67 309 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 OR2H1Q9GZK4 316 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 TMEM38BQ9NVV0 291 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 THSD7AQ9UPZ6 1657 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 MEOX1P50221 254 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 DDA1Q9BW61 102 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 THYN1Q9P016 225 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 PRNDQ9UKY0 176 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 TUBGCP6Q96RT7 1819 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 CA11O75493 328 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 GCM2O75603 506 aaPredicted RBP15.15■□□□□ 0.02
SYNPO-201ENST00000307662 POU2F2P09086 479 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 HIST1H2BAQ96A08 127 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 NPDC1Q9NQX5 325 aaPredicted RBP15.15■□□□□ 0.02
SYNPO-201ENST00000307662 CELA2BP08218 269 aaPredicted RBP15.15■□□□□ 0.02
SYNPO-201ENST00000307662 ACP1P24666 158 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 HINT1P49773 126 aaPredicted RBP15.15■□□□□ 0.02
SYNPO-201ENST00000307662 SRSF5Q13243 272 aaKnown RBP15.15■□□□□ 0.02
SYNPO-201ENST00000307662 TRA2AQ13595 282 aaKnown RBP eCLIP15.15■□□□□ 0.02
SYNPO-201ENST00000307662 PLPPR5Q32ZL2 321 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 FLYWCH2Q96CP2 140 aaKnown RBP15.15■□□□□ 0.02
SYNPO-201ENST00000307662 ZFP30Q9Y2G7 519 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 RECKO95980 971 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 GABRA6Q16445 453 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 ADAMTSL1Q8N6G6 1762 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 LNP1A1A4G5 178 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 P2RY4P51582 365 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 TNXAQ16473 311 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 DEFB109BQ30KR1 87 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 Q5BKY6 102 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 STXBP6Q8NFX7 210 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 AP5S1Q9NUS5 200 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 IL19Q9UHD0 177 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 KIF13BQ9NQT8 1826 aa15.15■□□□□ 0.02
SYNPO-201ENST00000307662 C3orf80F5H4A9 247 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 J3QT63 122 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 PRRX1P54821 245 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 TNFAIP6P98066 277 aaPredicted RBP15.14■□□□□ 0.01
SYNPO-201ENST00000307662 P2RX4Q99571 388 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 GABRG3Q99928 467 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 GPR61Q9BZJ8 451 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 ZNF716A6NP11 495 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 MS4A18H0YCH9 400 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 H0YL77 283 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 BMI1P35226 326 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 MEF2BQ02080 365 aaPredicted RBP15.14■□□□□ 0.01
SYNPO-201ENST00000307662 MS4A18Q3C1V0 323 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 GUSBP11Q6P575 273 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 OR4X1Q8NH49 305 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 CLN8Q9UBY8 286 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 UQCR10Q9UDW1 63 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 PTPMT1Q8WUK0 201 aaPredicted RBP15.14■□□□□ 0.01
SYNPO-201ENST00000307662 GMPPAQ96IJ6 420 aaPredicted RBP15.14■□□□□ 0.01
SYNPO-201ENST00000307662 RNF122Q9H9V4 155 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 METTL1Q9UBP6 276 aaKnown RBP15.14■□□□□ 0.01
SYNPO-201ENST00000307662 UBR3Q6ZT12 1888 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 GZMHP20718 246 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 NPY1RP25929 384 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 RBM11P57052 281 aaKnown RBP15.14■□□□□ 0.01
SYNPO-201ENST00000307662 KLF3P57682 345 aaPredicted RBP15.14■□□□□ 0.01
SYNPO-201ENST00000307662 RSG1Q9BU20 258 aa15.14■□□□□ 0.01
SYNPO-201ENST00000307662 COL5A3P25940 1745 aaPredicted RBP15.13■□□□□ 0.01
SYNPO-201ENST00000307662 LOC105371267A0A1B0GV96 52 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 LYZL6O75951 148 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 CA2P00918 260 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 SRSF9Q13242 221 aaKnown RBP eCLIP15.13■□□□□ 0.01
SYNPO-201ENST00000307662 OR5A2Q8NGI9 324 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 GGACTQ9BVM4 153 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 CDIPTO14735 213 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 RAB29O14966 203 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 ASAH2BP0C7U1 165 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 HIST1H1BP16401 226 aaKnown RBP15.13■□□□□ 0.01
SYNPO-201ENST00000307662 COL9A1P20849 921 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 MPLP40238 635 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 PMCHL1Q16048 86 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 RHBDD2Q6NTF9 364 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 GAGE10A6NGK3 116 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 CD1BP29016 333 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 EIF4EBP2Q13542 120 aaPredicted RBP15.13■□□□□ 0.01
SYNPO-201ENST00000307662 AQP3Q92482 292 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 RASL10BQ96S79 203 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 AMMECR1Q9Y4X0 333 aaPredicted RBP15.13■□□□□ 0.01
SYNPO-201ENST00000307662 SPINK2P20155 84 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 ZNF137PP52743 207 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 RPL30P62888 115 aaKnown RBP15.13■□□□□ 0.01
SYNPO-201ENST00000307662 REC114Q7Z4M0 266 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 CLEC5AQ9NY25 188 aa15.13■□□□□ 0.01
SYNPO-201ENST00000307662 RALYQ9UKM9 306 aaKnown RBP15.13■□□□□ 0.01
SYNPO-201ENST00000307662 A0A1B0GV90 55 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 OR2A4O95047 310 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 SSX8Q7RTT4 187 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 ABHD14BQ96IU4 210 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 OR2A7Q96R45 310 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 SDHCQ99643 169 aaPredicted RBP15.12■□□□□ 0.01
SYNPO-201ENST00000307662 PARD6GQ9BYG4 376 aaPredicted RBP15.12■□□□□ 0.01
SYNPO-201ENST00000307662 NDUFB4O95168 129 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 GOSR1O95249 250 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms