RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 GLRX2Q9NS18 164 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 SLC7A10Q9NS82 523 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 FRRS1LQ9P0K9 344 aa5.65□□□□□ -1.51
VPS35-201ENST00000299138 MCTS1Q9ULC4 181 aaKnown RBP5.65□□□□□ -1.51
VPS35-201ENST00000299138 TMSB15BA0A087X1C1 80 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 TRAV1-1A0A0B4J248 108 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 RBFOX3A6NFN3 312 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 TMEM14DPA8MWL7 114 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 FCGR2BP31994 310 aaPredicted RBP5.64□□□□□ -1.51
VPS35-201ENST00000299138 MFAP5Q13361 173 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 CLEC18BQ6UXF7 455 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 LPAR4Q99677 370 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 SLC26A1Q9H2B4 701 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 STARD5Q9NSY2 213 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 OR5AC2Q9NZP5 309 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 PRSS50Q9UI38 385 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 PILRAQ9UKJ1 303 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 THSD7BQ9C0I4 1608 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 M0R135 149 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 GPR3P46089 330 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 RUNX3Q13761 415 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 RTL8BQ17RB0 113 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 SPINK9Q5DT21 86 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 NHLRC1Q6VVB1 395 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 HIST1H2BAQ96A08 127 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 ZNF799Q96GE5 643 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 MARS2Q96GW9 593 aaKnown RBP5.64□□□□□ -1.51
VPS35-201ENST00000299138 GUCD1Q96NT3 240 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 ABHD14AQ9BUJ0 271 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 OTOFQ9HC10 1997 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 SYNGR2O43760 224 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 DANCRP0C864 163 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 PSMB5P28074 263 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 CLDN17P56750 224 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 MRPS21P82921 87 aaKnown RBP5.64□□□□□ -1.51
VPS35-201ENST00000299138 MPV17LQ2QL34 196 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 AGBL5Q8NDL9 886 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 OR5R1Q8NH85 324 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 LYPD6BQ8NI32 183 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 ZG16BQ96DA0 208 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 TMEM38BQ9NVV0 291 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 ZDHHC8Q9ULC8 765 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 TRAV14DV4A0A0A6YYC5 116 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 POU3F2P20265 443 aaPredicted RBP5.64□□□□□ -1.51
VPS35-201ENST00000299138 CLDN18P56856 261 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 LSM6P62312 80 aaKnown RBP5.64□□□□□ -1.51
VPS35-201ENST00000299138 DEFB110Q30KQ9 67 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 DUSP13Q9UII6 198 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 SIGLEC5O15389 551 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 PCBD1P61457 104 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 PSG6Q00889 435 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 SIGLEC14Q08ET2 396 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 SLC25A34Q6PIV7 304 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 LIAT1Q6ZQX7 453 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 SHISA6Q6ZSJ9 500 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 POC1AQ8NBT0 407 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 OR51F2Q8NH61 342 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 RPEQ96AT9 228 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 MISP3Q96FF7 219 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 GABRG3Q99928 467 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 SLC25A33Q9BSK2 321 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 C1QTNF6Q9BXI9 259 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 COMMD5Q9GZQ3 224 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 RAB33BQ9H082 229 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 CHD5Q8TDI0 1954 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 PTPRDP23468 1912 aa5.64□□□□□ -1.51
VPS35-201ENST00000299138 TRAV12-3A0A0B4J271 114 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 NKX6-3A6NJ46 265 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 THY1P04216 161 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 FAHP16930 419 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 HOXA5P20719 270 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 SLC35B1P78383 322 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 BCORP1Q8N888 145 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 OR4S2Q8NH73 311 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 NEU1Q99519 415 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 LINC00470Q9BZP3 86 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 TUBD1Q9UJT1 453 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 PRTGQ2VWP7 1150 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 NUFIP2Q7Z417 695 aaKnown RBP5.63□□□□□ -1.51
VPS35-201ENST00000299138 C1orf43Q9BWL3 253 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 TWSG1Q9GZX9 223 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 COLCA2A8K830 154 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 SIRPB1O00241 398 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 SNAI2O43623 268 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 GPANK1O95872 356 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 BGLAPP02818 100 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 EMDP50402 254 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 C17orf67Q0P5P2 114 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 SRSF7Q16629 238 aaKnown RBP eCLIP5.63□□□□□ -1.51
VPS35-201ENST00000299138 ZNF48Q96MX3 618 aaPredicted RBP5.63□□□□□ -1.51
VPS35-201ENST00000299138 TRAV9-1A0A075B6T8 112 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 TMED7-TICAM2A0A0A6YYA0 188 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 TRBV11-1A0A0K0K1C0 115 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 C7orf71A4D174 169 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 NANOS3P60323 173 aaKnown RBP5.63□□□□□ -1.51
VPS35-201ENST00000299138 RIGQ13278 110 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 EXOSC7Q15024 291 aaKnown RBP5.63□□□□□ -1.51
VPS35-201ENST00000299138 SP6Q3SY56 376 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 DCAF12L2Q5VW00 463 aa5.63□□□□□ -1.51
VPS35-201ENST00000299138 DOLPP1Q86YN1 238 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms