RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TRAV39A0A0B4J263 110 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 NPFFO15130 113 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 LDLRAD4O15165 306 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 CA11O75493 328 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 RAB6AP20340 208 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 OMGP23515 440 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 CDK2P24941 298 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 ALDH3B2P48448 385 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 SERPINB10P48595 397 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 UBE2E1P51965 193 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 NCS1P62166 190 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 PLA2G7Q13093 441 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 GPR107Q5VW38 600 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 ZNF497Q6ZNH5 498 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 C6orf201Q7Z4U5 140 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 PNKDQ8N490 385 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 C11orf42Q8N5U0 333 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 OR56B1Q8NGI3 324 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 CALYQ9NYX4 217 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 SCOCQ9UIL1 159 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 TRAPPC2LQ9UL33 140 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 FAM96BQ9Y3D0 163 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 MEGF8Q7Z7M0 2845 aa14.77□□□□□ -0.05
CLN3-243ENST00000635973 KBTBD11-OT1A0A1B0GTJ5 212 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 MEIOCA2RUB1 952 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 METTL21EPA6NDL7 271 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 SOCS1O15524 211 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 TFAP2AP05549 437 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 SNRPBP14678 240 aaKnown RBP14.76□□□□□ -0.05
CLN3-243ENST00000635973 EFNB2P52799 333 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 VBP1P61758 197 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 PRR31Q5SQ13 230 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 HEPN1Q6WQI6 88 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 Q6YL49 198 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 CROCCP3Q8IVE0 287 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 OR4K15Q8NH41 348 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 LGALS14Q8TCE9 139 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 SULT4A1Q9BR01 284 aa14.76□□□□□ -0.05
CLN3-243ENST00000635973 CHMP1AQ9HD42 196 aaPredicted RBP14.76□□□□□ -0.05
CLN3-243ENST00000635973 A0A0U1RQK1 487 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 A0A1B0GUS0 222 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 FAM181BA6NEQ2 426 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 GABARAPO95166 117 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 PAHP00439 452 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 IL1AP01583 271 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 MT-ND4P03905 459 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 ARG1P05089 322 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 MDKP21741 143 aaPredicted RBP14.75□□□□□ -0.05
CLN3-243ENST00000635973 NFYBP25208 207 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 SSTR5P35346 364 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 LGALS4P56470 323 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 DYNC1I2Q13409 638 aaKnown RBP14.75□□□□□ -0.05
CLN3-243ENST00000635973 LTC4SQ16873 150 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 C17orf58Q2M2W7 97 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 C6orf183Q5T699 404 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 OR52W1Q6IF63 320 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 ANKRD13BQ86YJ7 626 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 PIP4P2Q8N4L2 257 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 FAM89BQ8N5H3 189 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 OR4F5Q8NH21 305 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 TAF15Q92804 592 aaKnown RBP eCLIP14.75□□□□□ -0.05
CLN3-243ENST00000635973 PTX4Q96A99 478 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 FAAP24Q9BTP7 215 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 ATG5Q9H1Y0 275 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 TMEM133Q9H2Q1 129 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 PRDM13Q9H4Q3 707 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 BEX1Q9HBH7 125 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 MGAM2Q2M2H8 2515 aa14.75□□□□□ -0.05
CLN3-243ENST00000635973 FAM172BPA6NC97 362 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 MMP23AO75900 390 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 SAA4P35542 130 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 RPL5P46777 297 aaKnown RBP14.74□□□□□ -0.05
CLN3-243ENST00000635973 HCP5Q6MZN7 132 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 SLC16A12Q6ZSM3 486 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 Q6ZTK2 550 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 TMEM86BQ8N661 226 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 SSMEM1Q8WWF3 244 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 ARL11Q969Q4 196 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 ARHGAP5-AS1Q96IT6 56 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 CLEC7AQ9BXN2 247 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 NAA50Q9GZZ1 169 aaKnown RBP14.74□□□□□ -0.05
CLN3-243ENST00000635973 RAB9BQ9NP90 201 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 IDI2-AS1Q9NZ38 188 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 POMT1Q9Y6A1 747 aa14.74□□□□□ -0.05
CLN3-243ENST00000635973 A0A075B6Q4 140 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 IGHV2-26A0A0B4J1V2 119 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 NOL3O60936 208 aaKnown RBP14.73□□□□□ -0.05
CLN3-243ENST00000635973 MELTFP08582 738 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 GZMHP20718 246 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 RPS19P39019 145 aaKnown RBP14.73□□□□□ -0.05
CLN3-243ENST00000635973 RAG2P55895 527 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 MRPS15P82914 257 aaKnown RBP14.73□□□□□ -0.05
CLN3-243ENST00000635973 MIDNQ504T8 468 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 TRAT1Q6PIZ9 186 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 RTN4RL2Q86UN3 420 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 CLVS1Q8IUQ0 354 aaPredicted RBP14.73□□□□□ -0.05
CLN3-243ENST00000635973 PRR18Q8N4B5 295 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 RFESDQ8TAC1 157 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 SETD6Q8TBK2 473 aa14.73□□□□□ -0.05
CLN3-243ENST00000635973 MRPL30Q8TCC3 161 aaKnown RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms