RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 IGKV1-12A0A0C4DH73 117 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 LOC100653049A0A140TA62 436 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 TVP23AA6NH52 213 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 K7EQS6 105 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 KRT34O76011 436 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 IGKV1D-12P01611 117 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 IGKV2D-40P01614 121 aaPredicted RBP0.34□□□□□ -2.36
SCN1A-208ENST00000625916 FGF4P08620 206 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 CPN2P22792 545 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 PYCR1P32322 319 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 CD200P41217 278 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 GCLMP48507 274 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 BCAP31P51572 246 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 AKR1C2P52895 323 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 RHOAP61586 193 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 CACNA1SQ13698 1873 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 OLIG3Q7RTU3 272 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 ARHGAP18Q8N392 663 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 ZIC4Q8N9L1 334 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 FAM184AQ8NB25 1140 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 GATD1Q8NB37 220 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 RNF133Q8WVZ7 376 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 TMIGD2Q96BF3 282 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 PITX2Q99697 317 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 PECRQ9BY49 303 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 BLZF1Q9H2G9 400 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 SMDT1Q9H4I9 107 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 DDX18Q9NVP1 670 aaKnown RBP0.34□□□□□ -2.36
SCN1A-208ENST00000625916 SDHAF2Q9NX18 166 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 KPTNQ9Y664 436 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 AK9Q5TCS8 1911 aa0.34□□□□□ -2.36
SCN1A-208ENST00000625916 ADAMTSL3P82987 1691 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 CCDC88CQ9P219 2028 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 NYNRINQ9P2P1 1898 aaKnown RBP0.33□□□□□ -2.36
SCN1A-208ENST00000625916 ATG2BQ96BY7 2078 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 NCKAP5O14513 1909 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 IGHV3-15A0A0B4J1V0 119 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 A0A1B0GVG6 124 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 I3L4J1 428 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 AKR7A2O43488 359 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 ENSAO43768 121 aaKnown RBP0.33□□□□□ -2.36
SCN1A-208ENST00000625916 PDCD6O75340 191 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 LTAP01374 205 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 HSPA13P48723 471 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 INPP1P49441 399 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 TTPAP49638 278 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 RAP1GDS1P52306 607 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 RAB38P57729 211 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 DAOAP59103 153 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 HBG1P69891 147 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 HBG2P69892 147 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 STX4Q12846 297 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 PIP5KL1Q5T9C9 394 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 RESP18Q5W5W9 173 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 AGTRAPQ6RW13 159 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 CLEC20AQ6ZU45 233 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 C2orf91Q6ZV80 131 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 TRIML2Q8N7C3 387 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 ZNF283Q8N7M2 679 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 OR10A6Q8NH74 314 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 LHFPL5Q8TAF8 219 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 NAP1L5Q96NT1 182 aaPredicted RBP0.33□□□□□ -2.36
SCN1A-208ENST00000625916 BIRC8Q96P09 236 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 MGLLQ99685 303 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 UTP23Q9BRU9 249 aaKnown RBP0.33□□□□□ -2.36
SCN1A-208ENST00000625916 TIMM21Q9BVV7 248 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 SUCNR1Q9BXA5 334 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 CYSTM1Q9H1C7 97 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 MRPS16Q9Y3D3 137 aaKnown RBP0.33□□□□□ -2.36
SCN1A-208ENST00000625916 MTCH2Q9Y6C9 303 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 USH1CQ9Y6N9 552 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 V9GYY9 64 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 KDM5BQ9UGL1 1544 aa0.33□□□□□ -2.36
SCN1A-208ENST00000625916 MDC1Q14676 2089 aaKnown RBP0.33□□□□□ -2.36
SCN1A-208ENST00000625916 NEURL4Q96JN8 1562 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 IGHV3-73A0A0B4J1V6 119 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 IGKV3D-7A0A0C4DH55 119 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 IGKV3OR2-268A0A0C4DH90 116 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 FAM183AA6NL82 134 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 TMEM250H0YL14 139 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 K7EN84 100 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 CD8AP01732 235 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 IGKV5-2P06315 115 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 ZNF705DP0CH99 300 aaPredicted RBP0.32□□□□□ -2.36
SCN1A-208ENST00000625916 ZNF705BP0CI00 300 aaPredicted RBP0.32□□□□□ -2.36
SCN1A-208ENST00000625916 IL9P15248 144 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 TUBG1P23258 451 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 CLDN8P56748 225 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 DSTNP60981 165 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 RAB2AP61019 212 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 ERHP84090 104 aaKnown RBP0.32□□□□□ -2.36
SCN1A-208ENST00000625916 RELAQ04206 551 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 HIKESHIQ53FT3 197 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 Q6ZTI0 123 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 OR8G5Q8NG78 346 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 OR11H1Q8NG94 326 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 SPACA4Q8TDM5 124 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 PEX13Q92968 403 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 FAM131CQ96AQ9 280 aa0.32□□□□□ -2.36
SCN1A-208ENST00000625916 ZNF396Q96N95 335 aaPredicted RBP0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms