RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RAB18Q9NP72 206 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 CISD1Q9NZ45 108 aaKnown RBP6.71□□□□□ -1.34
VPS39-213ENST00000570062 OR6C3Q9NZP0 311 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 LPAR3Q9UBY5 353 aa6.71□□□□□ -1.34
VPS39-213ENST00000570062 ZNF230Q9UIE0 474 aaPredicted RBP6.71□□□□□ -1.34
VPS39-213ENST00000570062 FREM1Q5H8C1 2179 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 TRBV6-7A0A0A0MS04 114 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 C9orf170A2RU37 121 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 NKX6-3A6NJ46 265 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 RFPL4AA6NLU0 287 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 SHISA9B4DS77 424 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 RFPL4AL1F8VTS6 287 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 SIRPB1O00241 398 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 SPINT2O43291 252 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 C1QL1O75973 258 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 SFT2D2O95562 160 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 IFNA21P01568 189 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 HPXP02790 462 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 AKR1C4P17516 323 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 ZBTB25P24278 435 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 DUSP1P28562 367 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 RBMXP38159 391 aaKnown RBP6.7□□□□□ -1.34
VPS39-213ENST00000570062 GZMKP49863 264 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 PPOXP50336 477 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 NPY4RP50391 375 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 RND3P61587 244 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 MRPS11P82912 194 aaKnown RBP6.7□□□□□ -1.34
VPS39-213ENST00000570062 FCN2Q15485 313 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 IGFBP7Q16270 282 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 CARTPTQ16568 116 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 CR1LQ2VPA4 569 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 ZNF672Q499Z4 452 aaPredicted RBP6.7□□□□□ -1.34
VPS39-213ENST00000570062 ESCO2Q56NI9 601 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 AADACL3Q5VUY0 350 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 PRAMEF6Q5VXH4 476 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 TEX36Q5VZQ5 186 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 ZNF660Q6AZW8 331 aaPredicted RBP6.7□□□□□ -1.34
VPS39-213ENST00000570062 MOGAT3Q86VF5 341 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 MUC20Q8N307 709 aaPredicted RBP6.7□□□□□ -1.34
VPS39-213ENST00000570062 MRPL30Q8TCC3 161 aaKnown RBP6.7□□□□□ -1.34
VPS39-213ENST00000570062 ITLN1Q8WWA0 313 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 NEU4Q8WWR8 484 aaPredicted RBP6.7□□□□□ -1.34
VPS39-213ENST00000570062 NINJ1Q92982 152 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 GALMQ96C23 342 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 SDSLQ96GA7 329 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 CABLES2Q9BTV7 478 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 TOLLIPQ9H0E2 274 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 RAB1BQ9H0U4 201 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 ZNF665Q9H7R5 613 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 SAP30LQ9HAJ7 183 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 RANGRFQ9HD47 186 aaPredicted RBP6.7□□□□□ -1.34
VPS39-213ENST00000570062 GCM1Q9NP62 436 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 DLL4Q9NR61 685 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 UFSP2Q9NUQ7 469 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 COMMD9Q9P000 198 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 MGAT4CQ9UBM8 478 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 OR14J1Q9UGF5 321 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 VSIG4Q9Y279 399 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 ABCA12Q86UK0 2595 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 GTF3C1Q12789 2109 aa6.7□□□□□ -1.34
VPS39-213ENST00000570062 TEX13DA0A0J9YY54 714 aaPredicted RBP6.69□□□□□ -1.34
VPS39-213ENST00000570062 DUXBA0A1W2PPF3 345 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 NKX2-6A6NCS4 301 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 OR5H14A6NHG9 310 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 RNF212BA8MTL3 300 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 B8ZZF3 427 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 E7EQL1 145 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 K7N7A8 449 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 LGALS8O00214 317 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 SDCBPO00560 298 aaPredicted RBP6.69□□□□□ -1.34
VPS39-213ENST00000570062 HSPA12AO43301 675 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 TUSC2O75896 110 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 PPYP01298 95 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 IFNA2P01563 188 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 WNT2P09544 360 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 VSIG10L2P0DP72 767 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 PSG2P11465 335 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 VAMP1P23763 118 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 IL2RGP31785 369 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 HTD2P86397 168 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 COL10A1Q03692 680 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 TFF3Q07654 80 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 SRSF1Q07955 248 aaKnown RBP eCLIP6.69□□□□□ -1.34
VPS39-213ENST00000570062 SRSF4Q08170 494 aaKnown RBP6.69□□□□□ -1.34
VPS39-213ENST00000570062 DAZAP2Q15038 168 aaPredicted RBP6.69□□□□□ -1.34
VPS39-213ENST00000570062 HMGN3Q15651 99 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 KRBOX4Q5JUW0 171 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 ZNF826PQ6ZT77 177 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 C22orf34Q6ZV56 151 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 NCCRP1Q6ZVX7 275 aaPredicted RBP6.69□□□□□ -1.34
VPS39-213ENST00000570062 MUC15Q8N387 334 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 GCSAMQ8N6F7 178 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 OR10A7Q8NGE5 316 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 OR5T2Q8NGG2 359 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 RAB39BQ96DA2 213 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 GALNT14Q96FL9 552 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 SEC22CQ9BRL7 303 aa6.69□□□□□ -1.34
VPS39-213ENST00000570062 RTBDNQ9BSG5 229 aaPredicted RBP6.69□□□□□ -1.34
VPS39-213ENST00000570062 HDHD3Q9BSH5 251 aaPredicted RBP6.69□□□□□ -1.34
VPS39-213ENST00000570062 RSRP1Q9BUV0 290 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms