RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 GHRLQ9UBU3 117 aa7.95□□□□□ -1.14
CLN3-220ENST00000566040 GLS2Q9UI32 602 aa7.95□□□□□ -1.14
CLN3-220ENST00000566040 V9GY05 133 aa7.95□□□□□ -1.14
CLN3-220ENST00000566040 TRGV10A0A0A0MS01 117 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 UBE2QL1A1L167 161 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 VGLL3A8MV65 326 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 F2RL2O00254 374 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 SLC31A2O15432 143 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 FBP1P09467 338 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 HKR1P10072 659 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 CD36P16671 472 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 FUT3P21217 361 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 SCGB2A2Q13296 93 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 GPR176Q14439 515 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 RAB11BQ15907 218 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 C2orf76Q3KRA6 126 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 ATAD3CQ5T2N8 411 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 TMEM86BQ8N661 226 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 SPATA3Q8NHX4 192 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 RFESDQ8TAC1 157 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 PPP1R35Q8TAP8 253 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 ZNF596Q8TC21 504 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 SLC25A38Q96DW6 304 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 CHCHD6Q9BRQ6 235 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 NAA50Q9GZZ1 169 aaKnown RBP7.94□□□□□ -1.14
CLN3-220ENST00000566040 C1RLQ9NZP8 487 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 STEAP1Q9UHE8 339 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 PEX16Q9Y5Y5 336 aa7.94□□□□□ -1.14
CLN3-220ENST00000566040 A0A087WXM4 84 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 TMEM30CPA0ZSE6 113 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 FAM181BA6NEQ2 426 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 TRIM77I1YAP6 450 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 AIPO00170 330 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 RAB27BO00194 218 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 GPR137BO60478 399 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 IGHV3-7P01780 117 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 ARG1P05089 322 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 GLAP06280 429 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 RAB3BP20337 219 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 SDC2P34741 201 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 RAB13P51153 203 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 KRTAP10-3P60369 221 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 BLMHQ13867 455 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 GNMTQ14749 295 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 HLA-DRB5Q30154 266 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 TRAPPC6BQ86SZ2 158 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 OR13F1Q8NGS4 319 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 OR4K15Q8NH41 348 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 OR1L1Q8NH94 360 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 KCNG3Q8TAE7 436 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 CCDC107Q8WV48 283 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 SSMEM1Q8WWF3 244 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 FAAP24Q9BTP7 215 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 CLEC7AQ9BXN2 247 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 PARP12Q9H0J9 701 aaKnown RBP7.93□□□□□ -1.14
CLN3-220ENST00000566040 CST11Q9H112 138 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 HEXA-AS1Q9H8Q6 139 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 ZMAT3Q9HA38 289 aaKnown RBP7.93□□□□□ -1.14
CLN3-220ENST00000566040 PLGRKTQ9HBL7 147 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 TNFRSF19Q9NS68 423 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 IDI2-AS1Q9NZ38 188 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 OR6C3Q9NZP0 311 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 VPREB3Q9UKI3 123 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 ELF5Q9UKW6 265 aaPredicted RBP7.93□□□□□ -1.14
CLN3-220ENST00000566040 PSG11Q9UQ72 335 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 TBL2Q9Y4P3 447 aaKnown RBP7.93□□□□□ -1.14
CLN3-220ENST00000566040 POMT1Q9Y6A1 747 aa7.93□□□□□ -1.14
CLN3-220ENST00000566040 DNAH3Q8TD57 4116 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 IGHV3-43A0A0B4J1X8 118 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 IGKV1-6A0A0C4DH72 117 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 A0A1W2PPE3 182 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 A0A1W2PPH5 198 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 A0A1W2PPI3 338 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 H3BUX3 64 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 MFNGO00587 321 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 ORC5O43913 435 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 PAHP00439 452 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 TFAP2AP05549 437 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 IGHV3-43DP0DP04 118 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 ARSBP15848 533 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 ALDH3B2P48448 385 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 ZNF134P52741 427 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 HMGN3Q15651 99 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 PLA1AQ53H76 456 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 AWAT1Q58HT5 328 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 C16orf87Q6PH81 154 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 ABHD12Q8N2K0 398 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 OR13D1Q8NGV5 346 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 OR5H6Q8NGV6 325 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 CFHR4Q92496 578 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 ST6GALNAC6Q969X2 333 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 ARHGAP5-AS1Q96IT6 56 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 JMJD8Q96S16 334 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 S100A13Q99584 98 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 PECRQ9BY49 303 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 BARHL1Q9BZE3 327 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 SLITRK2Q9H156 845 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 GAL3ST2Q9H3Q3 398 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 LIN7BQ9HAP6 207 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 SPACA1Q9HBV2 294 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms