RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PAX5Q02548 391 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 DYNC1I2Q13409 638 aaKnown RBP14.07□□□□□ -0.16
CLN3-217ENST00000565354 IDNKQ5T6J7 187 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 PRAMEF5Q5TYX0 476 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 SIGIRRQ6IA17 410 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 OR52W1Q6IF63 320 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 C9orf139Q6ZV77 190 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 C11orf42Q8N5U0 333 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 SIGLECL1Q8N7X8 197 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 CHMP1AQ9HD42 196 aaPredicted RBP14.07□□□□□ -0.16
CLN3-217ENST00000565354 CALYQ9NYX4 217 aa14.07□□□□□ -0.16
CLN3-217ENST00000565354 TRAV39A0A0B4J263 110 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 SOCS1O15524 211 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 PAHP00439 452 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 RAB6AP20340 208 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 GPR107Q5VW38 600 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 ZNF497Q6ZNH5 498 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 C6orf201Q7Z4U5 140 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 CROCCP3Q8IVE0 287 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 OR4K15Q8NH41 348 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 DYRK2Q92630 601 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 FAAP24Q9BTP7 215 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 TMEM133Q9H2Q1 129 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 SCOCQ9UIL1 159 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 WNK1Q9H4A3 2382 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 DSCAML1Q8TD84 2053 aa14.06□□□□□ -0.16
CLN3-217ENST00000565354 A0A0A6YYD4 124 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 KBTBD11-OT1A0A1B0GTJ5 212 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 LDLRAD4O15165 306 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 MT-ND4P03905 459 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 ARG1P05089 322 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 TFAP2AP05549 437 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 SNRPBP14678 240 aaKnown RBP14.05□□□□□ -0.16
CLN3-217ENST00000565354 GZMHP20718 246 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 OMGP23515 440 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 NFYBP25208 207 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 ALDH3B2P48448 385 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 VBP1P61758 197 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 NCS1P62166 190 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 MRPS15P82914 257 aaKnown RBP14.05□□□□□ -0.16
CLN3-217ENST00000565354 LTC4SQ16873 150 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 DEFB112Q30KQ8 113 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 C6orf183Q5T699 404 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 HEPN1Q6WQI6 88 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 Q6ZTK2 550 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 ANKRD13BQ86YJ7 626 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 FAM89BQ8N5H3 189 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 LGALS14Q8TCE9 139 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 SULT4A1Q9BR01 284 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 CLEC7AQ9BXN2 247 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 ATG5Q9H1Y0 275 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 RAB9BQ9NP90 201 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 IDI2-AS1Q9NZ38 188 aa14.05□□□□□ -0.16
CLN3-217ENST00000565354 SOX21Q9Y651 276 aaPredicted RBP14.05□□□□□ -0.16
CLN3-217ENST00000565354 A0A0U1RQK1 487 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 MDFIC2A0A1B0GVS7 189 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 IL1AP01583 271 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 FBP1P09467 338 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 SAA4P35542 130 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 EFNB2P52799 333 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 PLA2G7Q13093 441 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 BAMBIQ13145 260 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 C17orf58Q2M2W7 97 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 HCP5Q6MZN7 132 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 TRAT1Q6PIZ9 186 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 RFESDQ8TAC1 157 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 SETD6Q8TBK2 473 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 ARL11Q969Q4 196 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 PTX4Q96A99 478 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 PHF21AQ96BD5 680 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 KCNIP1Q9NZI2 227 aa14.04□□□□□ -0.16
CLN3-217ENST00000565354 FAM172BPA6NC97 362 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 TOR1AO14656 332 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 NOL3O60936 208 aaKnown RBP14.03□□□□□ -0.16
CLN3-217ENST00000565354 MMP23AO75900 390 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 SSTR5P35346 364 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 RPS19P39019 145 aaKnown RBP14.03□□□□□ -0.16
CLN3-217ENST00000565354 RPL5P46777 297 aaKnown RBP14.03□□□□□ -0.16
CLN3-217ENST00000565354 TUSC1Q2TAM9 212 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 PRR18Q8N4B5 295 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 PIP4P2Q8N4L2 257 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 OR10R2Q8NGX6 335 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 RAB3CQ96E17 227 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 ARHGAP5-AS1Q96IT6 56 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 ZNF48Q96MX3 618 aaPredicted RBP14.03□□□□□ -0.16
CLN3-217ENST00000565354 PECRQ9BY49 303 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 HSF4Q9ULV5 492 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 ETV7Q9Y603 341 aa14.03□□□□□ -0.16
CLN3-217ENST00000565354 A0A075B6Q4 140 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 IGHV2-26A0A0B4J1V2 119 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 SPINT2O43291 252 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 ORC5O43913 435 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 TMEM127O75204 238 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 GABARAPO95166 117 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 SCAND1P57086 179 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 RTN4RL2Q86UN3 420 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 CLVS1Q8IUQ0 354 aaPredicted RBP14.02□□□□□ -0.17
CLN3-217ENST00000565354 ABHD12Q8N2K0 398 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 OR10A7Q8NGE5 316 aa14.02□□□□□ -0.17
CLN3-217ENST00000565354 UBALD1Q8TB05 177 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms