RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 OR2AE1Q8NHA4 323 aa0.83□□□□□ -2.28
SCFD1-216ENST00000555550 OR52B2Q96RD2 323 aa0.83□□□□□ -2.28
SCFD1-216ENST00000555550 SIKE1Q9BRV8 207 aa0.83□□□□□ -2.28
SCFD1-216ENST00000555550 C12orf4Q9NQ89 552 aa0.83□□□□□ -2.28
SCFD1-216ENST00000555550 MS4A12Q9NXJ0 267 aa0.83□□□□□ -2.28
SCFD1-216ENST00000555550 EURLQ9NYK6 297 aa0.83□□□□□ -2.28
SCFD1-216ENST00000555550 ENPP5Q9UJA9 477 aa0.83□□□□□ -2.28
SCFD1-216ENST00000555550 FLVCR2Q9UPI3 526 aa0.83□□□□□ -2.28
SCFD1-216ENST00000555550 AP3M1Q9Y2T2 418 aa0.83□□□□□ -2.28
SCFD1-216ENST00000555550 NEBP20929 6669 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 PTPRKQ15262 1439 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 COL4A2P08572 1712 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 MGAT4DA6NG13 374 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 H7C2Y5 167 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 M0QXV9 152 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 FGF16O43320 207 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 TRAPPC3O43617 180 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 SOX14O95416 240 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 NPPAP01160 153 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 LYNX1P0DP58 116 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 CPMP14384 443 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 CNTFRP26992 372 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 GTF2H1P32780 548 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 CD164Q04900 197 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 BNIP2Q12982 314 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 TMED1Q13445 227 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 C10orf91Q5T1B1 145 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 SYT6Q5T7P8 510 aaPredicted RBP0.82□□□□□ -2.28
SCFD1-216ENST00000555550 LAIR2Q6ISS4 152 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 ERICH5Q6P6B1 374 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 OR2M3Q8NG83 312 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 OR10P1Q8NGE3 313 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 OR4A5Q8NH83 315 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 CLDN23Q96B33 292 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 ZNF396Q96N95 335 aaPredicted RBP0.82□□□□□ -2.28
SCFD1-216ENST00000555550 ZNF251Q9BRH9 671 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 UTP23Q9BRU9 249 aaKnown RBP0.82□□□□□ -2.28
SCFD1-216ENST00000555550 TSSK6Q9BXA6 273 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 ARL6Q9H0F7 186 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 SLC38A1Q9H2H9 487 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 CHRAC1Q9NRG0 131 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 KCNIP2Q9NS61 270 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 VAPAQ9P0L0 249 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 SNX24Q9Y343 169 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 ADAMTSL1Q8N6G6 1762 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 PCLOQ9Y6V0 5065 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 SYNE2Q8WXH0 6885 aaKnown RBP0.82□□□□□ -2.28
SCFD1-216ENST00000555550 KIAA0232Q92628 1395 aa0.82□□□□□ -2.28
SCFD1-216ENST00000555550 A0A1B0GTI1 187 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 HSBP1L1C9JCN9 74 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 J3QLI3 93 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 hCG_2039718K7EN88 272 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 LECT2O14960 151 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 POLR3GO15318 223 aaPredicted RBP0.81□□□□□ -2.28
SCFD1-216ENST00000555550 CYTH3O43739 400 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 SYNGR1O43759 233 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 FADS2O95864 444 aaKnown RBP0.81□□□□□ -2.28
SCFD1-216ENST00000555550 GYPCP04921 128 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 NQO2P16083 231 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 PRTN3P24158 256 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 PSMB6P28072 239 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 GABRA4P48169 554 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 GCLMP48507 274 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 PLTPP55058 493 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 AQP5P55064 265 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 STX3Q13277 289 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 HES3Q5TGS1 186 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 NELFCDQ8IXH7 590 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 SLC25A45Q8N413 288 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 C17orf78Q8N4C9 275 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 OTUD6BQ8N6M0 293 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 FER1L6-AS1Q8NA97 138 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 TMEM239Q8WW34 195 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 CDKL2Q92772 493 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 GLT1D1Q96MS3 346 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 HSPB9Q9BQS6 159 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 MRPL32Q9BYC8 188 aaKnown RBP0.81□□□□□ -2.28
SCFD1-216ENST00000555550 POMKQ9H5K3 350 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 METTL17Q9H7H0 456 aaPredicted RBP0.81□□□□□ -2.28
SCFD1-216ENST00000555550 SPACA1Q9HBV2 294 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 PSORS1C2Q9UIG4 136 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 ANXA10Q9UJ72 324 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 SLC22A14Q9Y267 594 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 AMMECR1Q9Y4X0 333 aaPredicted RBP0.81□□□□□ -2.28
SCFD1-216ENST00000555550 RAD50Q92878 1312 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 USP42Q9H9J4 1324 aaKnown RBP0.81□□□□□ -2.28
SCFD1-216ENST00000555550 RAB3GAP2Q9H2M9 1393 aa0.81□□□□□ -2.28
SCFD1-216ENST00000555550 A0A0J9YX75 114 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 A0A1B0GW15 77 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 SEC14L6B5MCN3 397 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 TCF21O43680 179 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 CCNOP22674 350 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 DNASE1L1P49184 302 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 RAB38P57729 211 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 CEACAM21Q3KPI0 293 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 CLEC20AQ6ZU45 233 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 NIT1Q86X76 327 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 ATPAF2Q8N5M1 289 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 OR11G2Q8NGC1 345 aa0.8□□□□□ -2.28
SCFD1-216ENST00000555550 OR6K2Q8NGY2 324 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms