RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 V9GY05 133 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 A0A0A6YYD4 124 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 TRIM64CA6NLI5 447 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 MCRIP1C9JLW8 97 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 H3BUI4 141 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 H3BUX3 64 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 ORC5O43913 435 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 PDCD6O75340 191 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 CHATP28329 748 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 GLP1RP43220 463 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 PSMD7P51665 324 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 DYNLT3P51808 116 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 FOXL1Q12952 345 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 RBM39Q14498 530 aaKnown RBP10.48□□□□□ -0.73
VPS28-216ENST00000533806 LRRC75BQ2VPJ9 315 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 C22orf42Q6IC83 251 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 SLC16A12Q6ZSM3 486 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 NICN1Q9BSH3 213 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 TXNL4BQ9NX01 149 aaKnown RBP10.48□□□□□ -0.73
VPS28-216ENST00000533806 IDI2-AS1Q9NZ38 188 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 MMP24Q9Y5R2 645 aa10.48□□□□□ -0.73
VPS28-216ENST00000533806 FBN3Q75N90 2809 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 ARSBP15848 533 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 HTR1DP28221 377 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 CLDN12P56749 244 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 OR10A3P58181 314 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 LOXL3P58215 753 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 DYNC1I2Q13409 638 aaKnown RBP10.47□□□□□ -0.73
VPS28-216ENST00000533806 P2RY14Q15391 338 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 RAB11BQ15907 218 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 SSX2Q16385 188 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 HLA-DRB5Q30154 266 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 C12orf54Q6X4T0 127 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 GDPGP1Q6ZNW5 385 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 OR51D1Q8NGF3 324 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 OR52M1Q8NGK5 317 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 RFESDQ8TAC1 157 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 FAM3DQ96BQ1 224 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 SULT4A1Q9BR01 284 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 TMEM59Q9BXS4 323 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 PLGRKTQ9HBL7 147 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 MBNL3Q9NUK0 354 aaKnown RBP10.47□□□□□ -0.73
VPS28-216ENST00000533806 ETAA1Q9NY74 926 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 DPM3Q9P2X0 92 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 STEAP1Q9UHE8 339 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 STUB1Q9UNE7 303 aa10.47□□□□□ -0.73
VPS28-216ENST00000533806 KIAA2026Q5HYC2 2103 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 FAM172BPA6NC97 362 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 IFITM5A6NNB3 132 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 C12orf77C9JDV5 145 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 BUB1B-PAK6H3BSN5 160 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 AIPO00170 330 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 F2RL2O00254 374 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 PDCD5O14737 125 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 TSPAN9O75954 239 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 JUNBP17275 347 aaPredicted RBP10.46□□□□□ -0.73
VPS28-216ENST00000533806 RCC1P18754 421 aaPredicted RBP10.46□□□□□ -0.73
VPS28-216ENST00000533806 MDKP21741 143 aaPredicted RBP10.46□□□□□ -0.73
VPS28-216ENST00000533806 RAB13P51153 203 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 TMEM50BP56557 158 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 PLA2G7Q13093 441 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 C2orf76Q3KRA6 126 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 CCBE1Q6UXH8 406 aaPredicted RBP10.46□□□□□ -0.73
VPS28-216ENST00000533806 Q6ZPA2 131 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 OR9G1Q8NH87 305 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 ZNF596Q8TC21 504 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 NEK7Q8TDX7 302 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 CCDC107Q8WV48 283 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 OR51E2Q9H255 320 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 ZNF696Q9H7X3 374 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 PSG11Q9UQ72 335 aa10.46□□□□□ -0.73
VPS28-216ENST00000533806 UBE2QL1A1L167 161 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 A6NDX4 124 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 BTBD17A6NE02 478 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 POM121CA8CG34 1229 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 J3QR06 171 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 SOCS1O15524 211 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 TNFAIP8O95379 198 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 NAPSAO96009 420 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 RAB3BP20337 219 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 NFYBP25208 207 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 PRRX1P54821 245 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 RAG2P55895 527 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 NEDD8Q15843 81 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 Q6ZSV7 163 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 C6orf201Q7Z4U5 140 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 ZNF554Q86TJ5 538 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 C8orf31Q8N9H6 132 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 TSPAN14Q8NG11 270 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 OR4K15Q8NH41 348 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 LINC01006Q8NI28 216 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 MRPL30Q8TCC3 161 aaKnown RBP10.45□□□□□ -0.74
VPS28-216ENST00000533806 LEAP2Q969E1 77 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 ARL11Q969Q4 196 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 NEDD4LQ96PU5 975 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 FAAP24Q9BTP7 215 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 ZNF747Q9BV97 191 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 MMP28Q9H239 520 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 C16orf95Q9H693 158 aa10.45□□□□□ -0.74
VPS28-216ENST00000533806 HSF4Q9ULV5 492 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms