RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 MT-ND4P03905 459 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 GLAP06280 429 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 CGB3P0DN86 165 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 CGB7P0DN87 165 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 CD37P11049 281 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 GALP22466 123 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 SSTR5P35346 364 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 RPS27AP62979 156 aaKnown RBP12.91□□□□□ -0.34
LIME1-209ENST00000494776 NEDD8Q15843 81 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 AANATQ16613 207 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 HES5Q5TA89 166 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 DHRS7BQ6IAN0 325 aaPredicted RBP12.91□□□□□ -0.34
LIME1-209ENST00000494776 CD200R1LQ6Q8B3 271 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 OR4F5Q8NH21 305 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 ARL11Q969Q4 196 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 KIRREL1Q96J84 757 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 URM1Q9BTM9 101 aaKnown RBP12.91□□□□□ -0.34
LIME1-209ENST00000494776 ZNF286AQ9HBT8 521 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 C1RLQ9NZP8 487 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 STUB1Q9UNE7 303 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 SSR3Q9UNL2 185 aa12.91□□□□□ -0.34
LIME1-209ENST00000494776 TMEM14DPA8MWL7 114 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 CD34P28906 385 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 RAG2P55895 527 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 CLDN12P56749 244 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 UNC119Q13432 240 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 C6orf183Q5T699 404 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 SYT6Q5T7P8 510 aaPredicted RBP12.9□□□□□ -0.34
LIME1-209ENST00000494776 SIGIRRQ6IA17 410 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 OR2W3Q7Z3T1 314 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 DYNAPQ8N1N2 210 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 OR10A7Q8NGE5 316 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 OR51D1Q8NGF3 324 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 OR4K15Q8NH41 348 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 CREB3L1Q96BA8 519 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 FAM3DQ96BQ1 224 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 BEX1Q9HBH7 125 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 VCX3AQ9NNX9 186 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 RAB9BQ9NP90 201 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 DPM3Q9P2X0 92 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 ANK2Q01484 3957 aa12.9□□□□□ -0.34
LIME1-209ENST00000494776 A0A087X0M5 115 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 A0A1B0GX30 115 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 LEUTXA8MZ59 168 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 NPIPB11E5RHQ5 1161 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 CA11O75493 328 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 TNFAIP8O95379 198 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 IGHV3-7P01780 117 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 RAB3BP20337 219 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 MDKP21741 143 aaPredicted RBP12.89□□□□□ -0.35
LIME1-209ENST00000494776 CFPP27918 469 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 BLVRBP30043 206 aaPredicted RBP12.89□□□□□ -0.35
LIME1-209ENST00000494776 CEACAM3P40198 252 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 ARHGDIBP52566 201 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 QRFPP83859 136 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 C2orf76Q3KRA6 126 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 OR4P4Q8NGL7 312 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 OR9G1Q8NH87 305 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 LEAP2Q969E1 77 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 NICN1Q9BSH3 213 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 TM2D1Q9BX74 207 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 LINC00574Q9H8X3 128 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 STEAP1Q9UHE8 339 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 KIAA2026Q5HYC2 2103 aa12.89□□□□□ -0.35
LIME1-209ENST00000494776 A0A1B0GUS0 222 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 VGLL3A8MV65 326 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 F2RL2O00254 374 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 SDCBPO00560 298 aaPredicted RBP12.88□□□□□ -0.35
LIME1-209ENST00000494776 SPINT2O43291 252 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 ORC5O43913 435 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 NDUFA7O95182 113 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 CHATP28329 748 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 GNG10P50151 68 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 RAB13P51153 203 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 OR10A3P58181 314 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 HLA-DRB5Q30154 266 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 LDLRAD2Q5SZI1 272 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 TRAT1Q6PIZ9 186 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 C6orf201Q7Z4U5 140 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 PRR18Q8N4B5 295 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 TSPAN14Q8NG11 270 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 UBALD1Q8TB05 177 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 FAAP24Q9BTP7 215 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 MMP28Q9H239 520 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 RAB18Q9NP72 206 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 PLEKHJ1Q9NW61 149 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 TXNL4BQ9NX01 149 aaKnown RBP12.88□□□□□ -0.35
LIME1-209ENST00000494776 KCNIP1Q9NZI2 227 aa12.88□□□□□ -0.35
LIME1-209ENST00000494776 AMMECR1Q9Y4X0 333 aaPredicted RBP12.88□□□□□ -0.35
LIME1-209ENST00000494776 A0A087WXM4 84 aa12.87□□□□□ -0.35
LIME1-209ENST00000494776 POM121CA8CG34 1229 aa12.87□□□□□ -0.35
LIME1-209ENST00000494776 BUB1B-PAK6H3BSN5 160 aa12.87□□□□□ -0.35
LIME1-209ENST00000494776 J3QR06 171 aa12.87□□□□□ -0.35
LIME1-209ENST00000494776 IGLV1-47P01700 117 aa12.87□□□□□ -0.35
LIME1-209ENST00000494776 FGF9P31371 208 aaPredicted RBP12.87□□□□□ -0.35
LIME1-209ENST00000494776 RELBQ01201 579 aa12.87□□□□□ -0.35
LIME1-209ENST00000494776 LIAT1Q6ZQX7 453 aa12.87□□□□□ -0.35
LIME1-209ENST00000494776 SLC16A12Q6ZSM3 486 aa12.87□□□□□ -0.35
LIME1-209ENST00000494776 SULT4A1Q9BR01 284 aa12.87□□□□□ -0.35
LIME1-209ENST00000494776 CHCHD6Q9BRQ6 235 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms