RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ADRA2AP08913 450 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 AP2S1P53680 142 aaPredicted RBP3.07□□□□□ -1.92
VPS13A-212ENST00000493341 SAPCD1Q5SSQ6 148 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 FBXL22Q6P050 247 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 OLIG3Q7RTU3 272 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 CDC26Q8NHZ8 85 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 ZNF461Q8TAF7 563 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 PIGXQ8TBF5 258 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 FAM57AQ8TBR7 257 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 PTH2Q96A98 100 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 TESCQ96BS2 214 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 PPCDCQ96CD2 204 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 RNF157Q96PX1 679 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 MS4A6AQ9H2W1 248 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 POMPQ9Y244 141 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 BTRCQ9Y297 605 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.07□□□□□ -1.92
VPS13A-212ENST00000493341 NUP155O75694 1391 aa3.07□□□□□ -1.92
VPS13A-212ENST00000493341 AGRNO00468 2067 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 CD300LBA8K4G0 201 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 TGOLN2O43493 480 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 IGKV1-39P01597 117 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 IGKV1D-39P04432 117 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 SOD3P08294 240 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 C8orf88P0DMB2 117 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 CD99P14209 185 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 OPRK1P41145 380 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 CXCL12P48061 93 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 IMPG1Q17R60 797 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 LUZP6Q538Z0 58 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 LPCAT4Q643R3 524 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 FA2HQ7L5A8 372 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 LINC01551Q86U37 167 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 CPNE9Q8IYJ1 553 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 OR5H2Q8NGV7 314 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 LINC01560Q8TB33 94 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 MRPS26Q9BYN8 205 aaKnown RBP3.06□□□□□ -1.92
VPS13A-212ENST00000493341 CHST5Q9GZS9 411 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 SND1-IT1Q9HBX3 110 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 HRASLSQ9HDD0 168 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 DCCP43146 1447 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 FAM135BQ49AJ0 1406 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 TNS2Q63HR2 1409 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 MED1Q15648 1581 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-212ENST00000493341 NHSL1Q5SYE7 1610 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 AHDC1Q5TGY3 1603 aaPredicted RBP3.06□□□□□ -1.92
VPS13A-212ENST00000493341 SHPRHQ149N8 1683 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 ROBO1Q9Y6N7 1651 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 NALCNQ8IZF0 1738 aa3.06□□□□□ -1.92
VPS13A-212ENST00000493341 PINLYPA6NC86 204 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 GOLGA6L19H0YKK7 550 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 CXCR6O00574 342 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 MAGEB4O15481 346 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-212ENST00000493341 TRAPPC3O43617 180 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 EPPINO95925 133 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 CALB1P05937 261 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 SNRPAP09012 282 aaKnown RBP3.05□□□□□ -1.92
VPS13A-212ENST00000493341 CD28P10747 220 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 FAM53BQ14153 422 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 UBE2SQ16763 222 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 TTMPQ5BVD1 217 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 ZNF684Q5T5D7 378 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 CLEC20AQ6ZU45 233 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 HS3ST5Q8IZT8 346 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 ZNF786Q8N393 782 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 SRSF12Q8WXF0 261 aaKnown RBP3.05□□□□□ -1.92
VPS13A-212ENST00000493341 DHRS9Q9BPW9 319 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 CHCHD7Q9BUK0 85 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 SLC22A4Q9H015 551 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 ASB8Q9H765 288 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 TAS2R9Q9NYW1 312 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 TP53TG3Q9ULZ0 132 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 GUCA1BQ9UMX6 200 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 C14orf166Q9Y224 244 aaKnown RBP3.05□□□□□ -1.92
VPS13A-212ENST00000493341 MIA3Q5JRA6 1907 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 NUP214P35658 2090 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-212ENST00000493341 PHLPP1O60346 1717 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 COL16A1Q07092 1604 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-212ENST00000493341 NRXN1Q9ULB1 1477 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 SPATA31E1Q6ZUB1 1445 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 IGHV2-26A0A0B4J1V2 119 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 C21orf140B9A014 251 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 C9JQL5 133 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 LGALS9O00182 355 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 RGS5O15539 181 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 RBFOX2O43251 390 aaKnown RBP eCLIP3.05□□□□□ -1.92
VPS13A-212ENST00000493341 ZNF207O43670 478 aaKnown RBP3.05□□□□□ -1.92
VPS13A-212ENST00000493341 SLC37A4O43826 429 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 RPS12P25398 132 aaKnown RBP3.05□□□□□ -1.92
VPS13A-212ENST00000493341 TGM4P49221 684 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 MGAT3Q09327 533 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 BCL2A1Q16548 175 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 SPIN4Q56A73 249 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 SPNS3Q6ZMD2 512 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 SHISA6Q6ZSJ9 500 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 FAM19A5Q7Z5A7 132 aaPredicted RBP3.05□□□□□ -1.92
VPS13A-212ENST00000493341 SLC25A45Q8N413 288 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 OR2K2Q8NGT1 345 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 CYGBQ8WWM9 190 aa3.05□□□□□ -1.92
VPS13A-212ENST00000493341 RAB8BQ92930 207 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms