RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 ZMPSTE24O75844 475 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 RAB36O95755 333 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 IGKV1D-12P01611 117 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 SPNP16150 400 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 CRABP1P29762 137 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 BLVRBP30043 206 aaPredicted RBP1.11□□□□□ -2.23
PTPN4-212ENST00000488896 PYCR1P32322 319 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 GTF2H1P32780 548 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 RHOAP61586 193 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 HES1Q14469 280 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 TRAM1Q15629 374 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 VAMP3Q15836 100 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 SPIN4Q56A73 249 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 CAVIN4Q5BKX8 364 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 HES3Q5TGS1 186 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 SSX7Q7RTT5 188 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 OLIG3Q7RTU3 272 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 CIDECQ96AQ7 238 aaPredicted RBP1.11□□□□□ -2.23
PTPN4-212ENST00000488896 CLDN23Q96B33 292 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 GLT1D1Q96MS3 346 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 POTEKPQ9BYX7 375 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 PRRG3Q9BZD7 231 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 IFT46Q9NQC8 304 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 TAS2R9Q9NYW1 312 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 OR51B4Q9Y5P0 310 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 CRB1P82279 1406 aa1.11□□□□□ -2.23
PTPN4-212ENST00000488896 IGHV3OR15-7A0A075B7D8 119 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 LOC102725191A0A1B0GVB3 256 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 IGSF23A1L1A6 192 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 ODF3BA8MYP8 253 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 C8orf87E5RJ46 101 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 I3L4J1 428 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 J3QLI3 93 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 FGF16O43320 207 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 ZNF189O75820 626 aaPredicted RBP1.1□□□□□ -2.23
PTPN4-212ENST00000488896 LTAP01374 205 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 AQP5P55064 265 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 MP68P56378 58 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 RAB2AP61019 212 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 UBE2KP61086 200 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 OR8G1Q15617 311 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 TRIP13Q15645 432 aaPredicted RBP1.1□□□□□ -2.23
PTPN4-212ENST00000488896 LAMTOR1Q6IAA8 161 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 RBM45Q8IUH3 476 aaKnown RBP1.1□□□□□ -2.23
PTPN4-212ENST00000488896 SPPL2BQ8TCT7 592 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 PDCD6IPQ8WUM4 868 aaKnown RBP1.1□□□□□ -2.23
PTPN4-212ENST00000488896 PRSS27Q9BQR3 290 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 TMBIM4Q9HC24 238 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 TAS2R13Q9NYV9 303 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 NXT1Q9UKK6 140 aaKnown RBP1.1□□□□□ -2.23
PTPN4-212ENST00000488896 COL18A1P39060 1754 aa1.1□□□□□ -2.23
PTPN4-212ENST00000488896 MUC16Q8WXI7 14507 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 COL4A2P08572 1712 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 NCKAP5O14513 1909 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 DOCK10Q96BY6 2186 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 TRAV8-2A0A0B4J237 113 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 A0A1B0GW15 77 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 RNASEK-C17orf49H0YIS7 233 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 NDUFS8O00217 210 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 UBDO15205 165 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 EPPINO95925 133 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 TPM1P09493 284 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 CCNOP22674 350 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 RPA3P35244 121 aaPredicted RBP1.09□□□□□ -2.23
PTPN4-212ENST00000488896 CBX5P45973 191 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 TSPAN31Q12999 210 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 FAM229BQ4G0N7 80 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 FAM183BPQ6ZVS7 135 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 TRIML2Q8N7C3 387 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 CDRT4Q8N9R6 151 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 SUN5Q8TC36 379 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 CD200R1Q8TD46 325 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 DDIT4LQ96D03 193 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 SIKE1Q9BRV8 207 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 TAPBPLQ9BX59 468 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 EBPLQ9BY08 206 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 RAB1BQ9H0U4 201 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 MYO5BQ9ULV0 1848 aa1.09□□□□□ -2.23
PTPN4-212ENST00000488896 A0A1W2PRG6 482 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 RAB19A4D1S5 217 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 ERICH4A6NGS2 130 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 KNCNA6PVL3 124 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 POLR3GO15318 223 aaPredicted RBP1.08□□□□□ -2.24
PTPN4-212ENST00000488896 MAGEA3P43357 314 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 GABRA4P48169 554 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 VSNL1P62760 191 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 CD164Q04900 197 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 SS18Q15532 418 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 C18orf21Q32NC0 220 aaPredicted RBP1.08□□□□□ -2.24
PTPN4-212ENST00000488896 FAM162BQ5T6X4 162 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 ZNF767PQ75MW2 155 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 SSX6Q7RTT6 188 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 DEFB119Q8N690 84 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 LRRC20Q8TCA0 184 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 PGLYRP3Q96LB9 341 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 CATSPER2Q96P56 530 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 FAAP24Q9BTP7 215 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 HAUS4Q9H6D7 363 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 MTCH2Q9Y6C9 303 aa1.08□□□□□ -2.24
PTPN4-212ENST00000488896 USH1CQ9Y6N9 552 aa1.08□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms