RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 UFSP2Q9NUQ7 469 aa15.42■□□□□ 0.06
COL9A3-205ENST00000466192 MSGN1A6NI15 193 aa15.42■□□□□ 0.06
COL9A3-205ENST00000466192 A6NLC8 198 aa15.42■□□□□ 0.06
COL9A3-205ENST00000466192 GLRXP35754 106 aa15.42■□□□□ 0.06
COL9A3-205ENST00000466192 CTAG1AP78358 180 aa15.42■□□□□ 0.06
COL9A3-205ENST00000466192 ZNF880Q6PDB4 577 aa15.42■□□□□ 0.06
COL9A3-205ENST00000466192 WDR82Q6UXN9 313 aa15.42■□□□□ 0.06
COL9A3-205ENST00000466192 GLYATL2Q8WU03 294 aa15.42■□□□□ 0.06
COL9A3-205ENST00000466192 DMRTA2Q96SC8 542 aa15.42■□□□□ 0.06
COL9A3-205ENST00000466192 SUCNR1Q9BXA5 334 aa15.42■□□□□ 0.06
COL9A3-205ENST00000466192 SPTA1P02549 2419 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 PHF1O43189 567 aaPredicted RBP15.41■□□□□ 0.06
COL9A3-205ENST00000466192 PET100P0DJ07 73 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 SPIN3Q5JUX0 258 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 FAM74A1Q5RGS3 127 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 LYZL2Q7Z4W2 148 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 CCDC71LQ8N9Z2 235 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 OR1S1Q8NH92 325 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 PLPPR1Q8TBJ4 325 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 JKAMPQ9P055 326 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 CHD8Q9HCK8 2581 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 C1QTNF9BB2RNN3 333 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 TOR1AO14656 332 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 SH2D1BO14796 132 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 IGHV3-13P01766 116 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 LYL1P12980 280 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 CEBPDP49716 269 aaPredicted RBP15.41■□□□□ 0.06
COL9A3-205ENST00000466192 VHLLQ6RSH7 139 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 LIAT1Q6ZQX7 453 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 OR2Z1Q8NG97 314 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 TMEM171Q8WVE6 324 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 TP53RKQ96S44 253 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 ELOVL5Q9NYP7 299 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 OR14J1Q9UGF5 321 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 TUBD1Q9UJT1 453 aa15.41■□□□□ 0.06
COL9A3-205ENST00000466192 ADGRG4Q8IZF6 3080 aa15.4■□□□□ 0.06
COL9A3-205ENST00000466192 TRAV39A0A0B4J263 110 aa15.4■□□□□ 0.06
COL9A3-205ENST00000466192 IGKV1D-13A0A0B4J2D9 117 aa15.4■□□□□ 0.06
COL9A3-205ENST00000466192 hCG_1807616A0A1W2PRN6 198 aa15.4■□□□□ 0.06
COL9A3-205ENST00000466192 MPPED1O15442 326 aa15.4■□□□□ 0.06
COL9A3-205ENST00000466192 IGKV1-13P0DP09 117 aa15.4■□□□□ 0.06
COL9A3-205ENST00000466192 ZNF565Q8N9K5 539 aa15.4■□□□□ 0.06
COL9A3-205ENST00000466192 MSI2Q96DH6 328 aaKnown RBP15.4■□□□□ 0.06
COL9A3-205ENST00000466192 GPHA2Q96T91 129 aa15.4■□□□□ 0.06
COL9A3-205ENST00000466192 C16orf97H3BN30 126 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 HAND1O96004 215 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 CTXN2P0C2S0 81 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 CD40P25942 277 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 NUP62P37198 522 aaPredicted RBP15.39■□□□□ 0.05
COL9A3-205ENST00000466192 MDH2P40926 338 aaKnown RBP15.39■□□□□ 0.05
COL9A3-205ENST00000466192 KCNJ3P48549 501 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 PCSK4Q6UW60 755 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 MEX3BQ6ZN04 569 aaKnown RBP15.39■□□□□ 0.05
COL9A3-205ENST00000466192 ZNF497Q6ZNH5 498 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 ZNF818PQ6ZRF7 136 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 SLC5A7Q9GZV3 580 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 TREM2Q9NZC2 230 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 FBXO9Q9UK97 447 aaPredicted RBP15.39■□□□□ 0.05
COL9A3-205ENST00000466192 C3orf85A0A1B0GTC6 90 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 TEX46H3BTG2 121 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 DLL1O00548 723 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 TUSC2O75896 110 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 SCGB1D2O95969 90 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 KLF3P57682 345 aaPredicted RBP15.39■□□□□ 0.05
COL9A3-205ENST00000466192 RBPJQ06330 500 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 SHEQ5VZ18 495 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 ACP7Q6ZNF0 438 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 PDZD9Q8IXQ8 264 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 GAPTQ8N292 157 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 PRR18Q8N4B5 295 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 LRTM2Q8N967 370 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 IL1F10Q8WWZ1 152 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 KIRREL1Q96J84 757 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 CNTNAP3BQ96NU0 1288 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 CNTNAP3Q9BZ76 1288 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 ZC4H2Q9NQZ6 224 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 NBEAQ8NFP9 2946 aa15.39■□□□□ 0.05
COL9A3-205ENST00000466192 HSD17B6O14756 317 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 HLA-DRB3P79483 266 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 FIP1L1Q6UN15 594 aaKnown RBP15.38■□□□□ 0.05
COL9A3-205ENST00000466192 TBC1D26Q86UD7 250 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 LGI3Q8N145 548 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 C18orf12Q96KH6 178 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 REG4Q9BYZ8 158 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 SHARPINQ9H0F6 387 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 POLEQ07864 2286 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 NCOR2Q9Y618 2525 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 ATRXP46100 2492 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 IGLV3-9A0A075B6K5 115 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 PSPNO60542 156 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 OR4A4PQ8NGN8 299 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 OR10J5Q8NHC4 309 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 AQP10Q96PS8 301 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 CCL28Q9NRJ3 127 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 PCDHB10Q9UN67 800 aa15.38■□□□□ 0.05
COL9A3-205ENST00000466192 LSM5Q9Y4Y9 91 aaKnown RBP15.38■□□□□ 0.05
COL9A3-205ENST00000466192 MFSD2BA6NFX1 497 aa15.37■□□□□ 0.05
COL9A3-205ENST00000466192 GPR31O00270 319 aa15.37■□□□□ 0.05
COL9A3-205ENST00000466192 TFF1P04155 84 aa15.37■□□□□ 0.05
COL9A3-205ENST00000466192 CD200P41217 278 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms