RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 COX5AP20674 150 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 ZNF146Q15072 292 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 SWI5Q1ZZU3 235 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 GCNT2Q8N0V5 402 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 OR2C3Q8N628 320 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 SLC25A40Q8TBP6 338 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 TSPAN9O75954 239 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 CD5P06127 495 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 DANCRP0C864 163 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 F2RP25116 425 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 RAB5CP51148 216 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 NHLH2Q02577 135 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 SRSF6Q13247 344 aaKnown RBP12.79□□□□□ -0.36
LDLR-202ENST00000455727 CLEC9AQ6UXN8 241 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 ZNF497Q6ZNH5 498 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 Q6ZRG5 221 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 PUSL1Q8N0Z8 303 aaKnown RBP12.79□□□□□ -0.36
LDLR-202ENST00000455727 WNT2BQ93097 391 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 SARAFQ96BY9 339 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 ADAT1Q9BUB4 502 aaKnown RBP12.79□□□□□ -0.36
LDLR-202ENST00000455727 TLNRD1Q9H1K6 362 aa12.79□□□□□ -0.36
LDLR-202ENST00000455727 OTOGLQ3ZCN5 2332 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 RNASEK-C17orf49H0YIS7 233 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 SLC33A1O00400 549 aaPredicted RBP12.78□□□□□ -0.36
LDLR-202ENST00000455727 IGKV3-15P01624 115 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 MUC1P15941 1255 aaPredicted RBP12.78□□□□□ -0.36
LDLR-202ENST00000455727 TUBG1P23258 451 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 KIR2DL2P43627 348 aaPredicted RBP12.78□□□□□ -0.36
LDLR-202ENST00000455727 ID3Q02535 119 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 COMMD1Q8N668 190 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 OR1J1Q8NGS3 322 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 TUBG2Q9NRH3 451 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 A0A1W2PR80 420 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.78□□□□□ -0.36
LDLR-202ENST00000455727 ADAM20O43506 726 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 OR2H2O95918 312 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 EWSR1Q01844 656 aaKnown RBP eCLIP12.78□□□□□ -0.366e-6■■■■□ 22.1
LDLR-202ENST00000455727 PSG7Q13046 419 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 ZNF154Q13106 437 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 GUCA2BQ16661 112 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 PLEKHF2Q9H8W4 249 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 ERRFI1Q9UJM3 462 aaPredicted RBP12.78□□□□□ -0.36
LDLR-202ENST00000455727 CACNA1GO43497 2377 aa12.78□□□□□ -0.36
LDLR-202ENST00000455727 FAM74A7A6NL05 159 aa12.77□□□□□ -0.36
LDLR-202ENST00000455727 SH2D1BO14796 132 aa12.77□□□□□ -0.36
LDLR-202ENST00000455727 SNAPINO95295 136 aa12.77□□□□□ -0.36
LDLR-202ENST00000455727 SLC25A6P12236 298 aa12.77□□□□□ -0.36
LDLR-202ENST00000455727 WT1P19544 449 aaPredicted RBP12.77□□□□□ -0.36
LDLR-202ENST00000455727 SPINK2P20155 84 aa12.77□□□□□ -0.36
LDLR-202ENST00000455727 ERVS71-1P61550 626 aa12.77□□□□□ -0.36
LDLR-202ENST00000455727 FAM74A3Q4VXF1 159 aa12.77□□□□□ -0.36
LDLR-202ENST00000455727 SLC25A31Q9H0C2 315 aa12.77□□□□□ -0.36
LDLR-202ENST00000455727 LYRM2Q9NU23 88 aaPredicted RBP12.77□□□□□ -0.36
LDLR-202ENST00000455727 MBNL3Q9NUK0 354 aaKnown RBP12.77□□□□□ -0.36
LDLR-202ENST00000455727 PURGQ9UJV8 347 aaKnown RBP12.77□□□□□ -0.36
LDLR-202ENST00000455727 PRR33A8MZF0 331 aa12.77□□□□□ -0.37
LDLR-202ENST00000455727 NUBP1P53384 320 aa12.77□□□□□ -0.37
LDLR-202ENST00000455727 DVL1P1P54792 670 aaPredicted RBP12.77□□□□□ -0.37
LDLR-202ENST00000455727 POLR2GP62487 172 aaKnown RBP eCLIP12.77□□□□□ -0.37
LDLR-202ENST00000455727 ZNF169Q14929 603 aaPredicted RBP12.77□□□□□ -0.37
LDLR-202ENST00000455727 OR10V1Q8NGI7 309 aa12.77□□□□□ -0.37
LDLR-202ENST00000455727 KLF14Q8TD94 323 aaPredicted RBP12.77□□□□□ -0.37
LDLR-202ENST00000455727 AKR1E2Q96JD6 320 aa12.77□□□□□ -0.37
LDLR-202ENST00000455727 TMEM231Q9H6L2 316 aa12.77□□□□□ -0.37
LDLR-202ENST00000455727 LUZP4Q9P127 313 aa12.77□□□□□ -0.37
LDLR-202ENST00000455727 STRAPQ9Y3F4 350 aaKnown RBP12.77□□□□□ -0.37
LDLR-202ENST00000455727 WIPI2Q9Y4P8 454 aa12.77□□□□□ -0.37
LDLR-202ENST00000455727 PTPRBP23467 1997 aa12.77□□□□□ -0.37
LDLR-202ENST00000455727 CDIPTO14735 213 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 NXPH2O95156 264 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 ZNF266Q14584 549 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 OR8G1Q15617 311 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 IGFBP7Q16270 282 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 ALKBH6Q3KRA9 238 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 CXorf66Q5JRM2 361 aaPredicted RBP12.76□□□□□ -0.37
LDLR-202ENST00000455727 CNEP1R1Q8N9A8 125 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 WDR31Q8NA23 367 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 CLRN3Q8NCR9 226 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 PLPPR1Q8TBJ4 325 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 GPHA2Q96T91 129 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 HES4Q9HCC6 221 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 PLSCR4Q9NRQ2 329 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 CACFD1Q9UGQ2 172 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 FAM96BQ9Y3D0 163 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 URB1O60287 2271 aaKnown RBP12.76□□□□□ -0.37
LDLR-202ENST00000455727 AHRRA9YTQ3 701 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 C1QTNF9BB2RNN3 333 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 PITX3O75364 302 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 CEACAM4O75871 244 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 HOXC12P31275 282 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 C9orf106Q8NAJ2 232 aa12.76□□□□□ -0.37
LDLR-202ENST00000455727 A0A1B0GU03 582 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 FAM24AA6NFZ4 105 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 C3orf80F5H4A9 247 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 SIRPB1O00241 398 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 WISP2O76076 250 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 H2AFB1P0C5Y9 115 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 OR8U9P0C7N5 309 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 VAMP2P63027 116 aa12.75□□□□□ -0.37
LDLR-202ENST00000455727 TESK1Q15569 626 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms