RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 APOL4Q9BPW4 351 aa6.43□□□□□ -1.38
HMGB1P39-201ENST00000366304 GHITMQ9H3K2 345 aa6.43□□□□□ -1.38
HMGB1P39-201ENST00000366304 IDI2-AS1Q9NZ38 188 aa6.43□□□□□ -1.38
HMGB1P39-201ENST00000366304 ABCD2Q9UBJ2 740 aa6.43□□□□□ -1.38
HMGB1P39-201ENST00000366304 KIF25Q9UIL4 384 aa6.43□□□□□ -1.38
HMGB1P39-201ENST00000366304 LAMP5Q9UJQ1 280 aa6.43□□□□□ -1.38
HMGB1P39-201ENST00000366304 SAMD4AQ9UPU9 718 aaKnown RBP6.43□□□□□ -1.38
HMGB1P39-201ENST00000366304 BAIAP2Q9UQB8 552 aa6.43□□□□□ -1.38
HMGB1P39-201ENST00000366304 GSTK1Q9Y2Q3 226 aa6.43□□□□□ -1.38
HMGB1P39-201ENST00000366304 AP3M1Q9Y2T2 418 aa6.43□□□□□ -1.38
HMGB1P39-201ENST00000366304 HSPG2P98160 4391 aa6.43□□□□□ -1.38
HMGB1P39-201ENST00000366304 MUC4Q99102 2169 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 IGHV7-81A0A0B4J1V7 117 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 TRAV41A0A0B4J266 112 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 CXorf65A6NEN9 183 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 RGS11O94810 467 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 CSN2P05814 226 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 MRPL3P09001 348 aaKnown RBP6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 CCL1P22362 96 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 BLVRBP30043 206 aaPredicted RBP6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 SSTR5P35346 364 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 GLP1RP43220 463 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 CDC42P60953 191 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 SCN1BQ07699 218 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 CDK5R1Q15078 307 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 MAPRE2Q15555 327 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 SPIN3Q5JUX0 258 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 SAMD4BQ5PRF9 694 aaKnown RBP6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 CEMP1Q6PRD7 247 aaPredicted RBP6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 DEGS2Q6QHC5 323 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 TMEM179BQ7Z7N9 219 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 CPOQ8IVL8 374 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 RP9Q8TA86 221 aaKnown RBP6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 RNF141Q8WVD5 230 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 RTN4IP1Q8WWV3 396 aaPredicted RBP6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 NIPSNAP1Q9BPW8 284 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 ELAC2Q9BQ52 826 aaKnown RBP6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 COMMD4Q9H0A8 199 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 ZCCHC4Q9H5U6 513 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 EXOSC4Q9NPD3 245 aaKnown RBP6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 IL1RAPQ9NPH3 570 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 PARP11Q9NR21 331 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 ZNF581Q9P0T4 197 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 OR52A1Q9UKL2 312 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 STUB1Q9UNE7 303 aa6.42□□□□□ -1.38
HMGB1P39-201ENST00000366304 CCDC182A6NF36 153 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 LOC110117498-PIK3R3F6TDL0 507 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 TNFRSF11BO00300 401 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 HSPB6O14558 160 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 SH2D1BO14796 132 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 SLC31A2O15432 143 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 SNX3O60493 162 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 IL1AP01583 271 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 GAPDHP04406 335 aaKnown RBP6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 FABP3P05413 133 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 MED14OSP0DP75 135 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 EGR2P11161 476 aaPredicted RBP6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 COX4I1P13073 169 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 CD1BP29016 333 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 FUT6P51993 359 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 GALEQ14376 348 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 ODF4Q2M2E3 257 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 ZNF679Q8IYX0 411 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 PGAM4Q8N0Y7 254 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 DEFB125Q8N687 156 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 OR10X1Q8NGY0 326 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 UBALD1Q8TB05 177 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 PLPPR1Q8TBJ4 325 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 MRGPRDQ8TDS7 321 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 DNAJC9Q8WXX5 260 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 TMEM106AQ96A25 262 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 RFT1Q96AA3 541 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 SPACA5Q96QH8 159 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 HOPXQ9BPY8 73 aaPredicted RBP6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 OVOL2Q9BRP0 275 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 CHCHD6Q9BRQ6 235 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 DGCR6LQ9BY27 220 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 GORASP2Q9H8Y8 452 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 OR6C3Q9NZP0 311 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 GTF2A1LQ9UNN4 478 aa6.41□□□□□ -1.38
HMGB1P39-201ENST00000366304 TRAV24A0A0B4J272 114 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 NUPR2A6NF83 97 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 DHRS7CA6NNS2 312 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 CCDC22O60826 627 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 ZNF254O75437 659 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 CCNB2O95067 398 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 HSPB1P04792 205 aaKnown RBP6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 CD7P09564 240 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 OR5H8P0DN80 308 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 ZNF44P15621 663 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 S100A5P33763 92 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 MECP2P51608 486 aaKnown RBP6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 RIDAP52758 137 aaKnown RBP6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 PDZK1IP1Q13113 114 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 ZNF829Q3KNS6 432 aaPredicted RBP6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 BCL2L15Q5TBC7 163 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 LGALS9CQ6DKI2 356 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 Q8IYB0 196 aa6.4□□□□□ -1.38
HMGB1P39-201ENST00000366304 YIPF7Q8N8F6 280 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms