RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 KCNK7Q9Y2U2 307 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 A0A1W2PPV9 198 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 CYR61O00622 381 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 COL8A1P27658 744 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 OR2D3Q8NGH3 330 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 SF3B5Q9BWJ5 86 aaKnown RBP15.2■□□□□ 0.02
SYNPO-201ENST00000307662 SMCHD1A6NHR9 2005 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 OR4A4PQ8NGN8 299 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 ABHD14AQ9BUJ0 271 aa15.2■□□□□ 0.02
SYNPO-201ENST00000307662 RHBDL1O75783 438 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 HIST1H1EP10412 219 aaKnown RBP15.19■□□□□ 0.02
SYNPO-201ENST00000307662 DRD3P35462 400 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 RAC3P60763 192 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 Q6ZS52 159 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 CARFQ8N187 725 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 ZBTB34Q8NCN2 500 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 RPEQ96AT9 228 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 HSPB9Q9BQS6 159 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 IGHV1OR21-1A0A087WYE8 117 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 hADV38S2A0JD32 116 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 MRPS11P82912 194 aaKnown RBP15.19■□□□□ 0.02
SYNPO-201ENST00000307662 RUNX1Q01196 453 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 KHDC1LQ5JSQ8 128 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 OR4A47Q6IF82 309 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 LRRC75AQ8NAA5 344 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 WNT2BQ93097 391 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 COL4A1P02462 1669 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 TRBV5-5A0A0J9YX44 114 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 FAM181AQ8N9Y4 354 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 OR1K1Q8NGR3 316 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 VSTM2AQ8TAG5 236 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 PGLYRP3Q96LB9 341 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 PRSS27Q9BQR3 290 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 CDX1P47902 265 aaPredicted RBP15.19■□□□□ 0.02
SYNPO-201ENST00000307662 ZNF519Q8TB69 540 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 HDHD3Q9BSH5 251 aaPredicted RBP15.19■□□□□ 0.02
SYNPO-201ENST00000307662 DSPPQ9NZW4 1301 aa15.19■□□□□ 0.02
SYNPO-201ENST00000307662 F5H697 171 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 MELTFP08582 738 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 LIMS1P48059 325 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 SCGB1D4Q6XE38 83 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 HKR1P10072 659 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 C1orf53Q5VUE5 145 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 UBALD2Q8IYN6 164 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 OR4B1Q8NGF8 309 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 AQP10Q96PS8 301 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 GPR132Q9UNW8 380 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 EIF3IQ13347 325 aaKnown RBP15.18■□□□□ 0.02
SYNPO-201ENST00000307662 SLC25A38Q96DW6 304 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 TP53RKQ96S44 253 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 K7ESF4 209 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 M0QZ24 198 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 HRKO00198 91 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 IGHV3-13P01766 116 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 IGHV3-7P01780 117 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 IL11RAQ14626 422 aa15.18■□□□□ 0.02
SYNPO-201ENST00000307662 TNFSF15O95150 251 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 TUBD1Q9UJT1 453 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 CES1P1Q9UKY3 287 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 PQLC2LA1A4F0 135 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 PNLIPP16233 465 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 KLK2P20151 261 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 HFEQ30201 348 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 SPATA45Q537H7 98 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 SLC23A3Q6PIS1 610 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 LINC00596Q86U02 117 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 CADM4Q8NFZ8 388 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 TM4SF19Q96DZ7 209 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 PLA2G3Q9NZ20 509 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 TGIF2-C20orf24A0A0A6YYL0 155 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 H2BFSP57053 126 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 TEPPQ6URK8 271 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 DOLPP1Q86YN1 238 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 TMEM204Q9BSN7 226 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 ZFC3H1O60293 1989 aaKnown RBP15.17■□□□□ 0.02
SYNPO-201ENST00000307662 TRBV23-1A0A0A0MS06 115 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 FCGR3AP08637 254 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 HOXD4P09016 255 aaPredicted RBP15.17■□□□□ 0.02
SYNPO-201ENST00000307662 TMEM252Q8N6L7 170 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 OR8A1Q8NGG7 326 aa15.17■□□□□ 0.02
SYNPO-201ENST00000307662 RPP25Q9BUL9 199 aaKnown RBP15.17■□□□□ 0.02
SYNPO-201ENST00000307662 NUP214P35658 2090 aaPredicted RBP15.17■□□□□ 0.02
SYNPO-201ENST00000307662 CENPVL1A0A0U1RR11 272 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 CXorf65A6NEN9 183 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 HERVK_113P61574 105 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 ACER2Q5QJU3 275 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 C1QL1O75973 258 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 MT-ND6P03923 174 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 ZNF83P51522 516 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 C10orf113Q5VZT2 155 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 OR52L2PQ8NGH6 319 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 OR1L1Q8NH94 360 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 OR2V2Q96R30 315 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 MFRPQ9BY79 579 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 SF3B6Q9Y3B4 125 aaKnown RBP15.16■□□□□ 0.02
SYNPO-201ENST00000307662 UFC1Q9Y3C8 167 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 TNFSF14O43557 240 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 LAIR2Q6ISS4 152 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 PERPQ96FX8 193 aa15.16■□□□□ 0.02
SYNPO-201ENST00000307662 PCGF1Q9BSM1 259 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms