RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 SDHAF2Q9NX18 166 aa0.74□□□□□ -2.29
SMCHD1-206ENST00000581631 IFNKQ9P0W0 207 aa0.74□□□□□ -2.29
SMCHD1-206ENST00000581631 SLC22A14Q9Y267 594 aa0.74□□□□□ -2.29
SMCHD1-206ENST00000581631 LINC00588Q9Y4M8 146 aa0.74□□□□□ -2.29
SMCHD1-206ENST00000581631 AHNAKQ09666 5890 aaKnown RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 IGHV1-45A0A0A0MS14 117 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 TRAV8-3A0A0A6YYJ7 113 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 FNDC10F2Z333 226 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 NDUFS8O00217 210 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 ZNF593O00488 134 aaPredicted RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 PRMT5O14744 637 aaPredicted RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 ANGP03950 147 aaKnown RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 S100A9P06702 114 aaKnown RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 IVLP07476 585 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 CCDC172P0C7W6 258 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 MAGEA3P43357 314 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 GABRA4P48169 554 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 XKP51811 444 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 C2orf80Q0P641 193 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 STX4Q12846 297 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 BNIP2Q12982 314 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 N4BP2L1Q5TBK1 243 aaPredicted RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 HES3Q5TGS1 186 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 FAHD1Q6P587 224 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 CLEC20AQ6ZU45 233 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 MUC15Q8N387 334 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 DRAXINQ8NBI3 349 aaPredicted RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 OR10P1Q8NGE3 313 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 SUN5Q8TC36 379 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 OR5P2Q8WZ92 322 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 ZNF75CPQ92670 426 aaPredicted RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 HIST1H2BAQ96A08 127 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 C19orf60Q96EN9 201 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 CPB2Q96IY4 423 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 CFAP53Q96M91 514 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 OLFM3Q96PB7 478 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 ZNF251Q9BRH9 671 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 PRRG3Q9BZD7 231 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 NXF2Q9GZY0 626 aaKnown RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 SLC25A31Q9H0C2 315 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 XKR8Q9H6D3 395 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 VCX3AQ9NNX9 186 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 RMND1Q9NWS8 449 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 FAM206AQ9NX38 181 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 CLEC2DQ9UHP7 191 aa0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 TBL2Q9Y4P3 447 aaKnown RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 BZW2Q9Y6E2 419 aaKnown RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 EIF4G1Q04637 1599 aaKnown RBP0.73□□□□□ -2.29
SMCHD1-206ENST00000581631 IGKV1-12A0A0C4DH73 117 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 SIGLEC16A6NMB1 481 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 ZNF879B4DU55 563 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 C8orf87E5RJ46 101 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 J3QLI3 93 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 NEMFO60524 1076 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 SHOX2O60902 331 aaPredicted RBP0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 CA2P00918 260 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 CSTAP01040 98 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 IGKV1D-12P01611 117 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 CECR9P0C854 216 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 ZNF3P17036 446 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 PTNP21246 168 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 PRTN3P24158 256 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 CRABP1P29762 137 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 ARR3P36575 388 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 NUP62P37198 522 aaPredicted RBP0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 GCLMP48507 274 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 DEFA6Q01524 100 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 APOFQ13790 326 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 USF2Q15853 346 aaPredicted RBP0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 HNRNPA1L2Q32P51 320 aaKnown RBP0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 CEACAM21Q3KPI0 293 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 FAM229BQ4G0N7 80 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 PID1Q7Z2X4 250 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 CYP4Z1Q86W10 505 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 ST13P4Q8IZP2 240 aaPredicted RBP0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 FAM58AQ8N1B3 248 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 SYS1Q8N2H4 156 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 TCAIMQ8N3R3 496 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 TRIML2Q8N7C3 387 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 SPERTQ8NA61 448 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 FER1L6-AS1Q8NA97 138 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 OR13C9Q8NGT0 318 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 CMBLQ96DG6 245 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 MSANTD3Q96H12 275 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 BIRC8Q96P09 236 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 OR52B2Q96RD2 323 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 VAT1Q99536 393 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 HINT2Q9BX68 163 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 TM6SF2Q9BZW4 377 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 ALX4Q9H161 411 aaPredicted RBP0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 RPUSD1Q9UJJ7 312 aaKnown RBP0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 STK38LQ9Y2H1 464 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 PHLDA3Q9Y5J5 127 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 ATRNO75882 1429 aa0.72□□□□□ -2.29
SMCHD1-206ENST00000581631 FLG2Q5D862 2391 aaPredicted RBP0.71□□□□□ -2.3
SMCHD1-206ENST00000581631 NRCAMQ92823 1304 aa0.71□□□□□ -2.3
SMCHD1-206ENST00000581631 USP42Q9H9J4 1324 aaKnown RBP0.71□□□□□ -2.3
SMCHD1-206ENST00000581631 COL18A1P39060 1754 aa0.71□□□□□ -2.3
SMCHD1-206ENST00000581631 SLIT2O94813 1529 aa0.71□□□□□ -2.3
SMCHD1-206ENST00000581631 ZNF638Q14966 1978 aaKnown RBP0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms