RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 ERGIC1Q969X5 290 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 SARAFQ96BY9 339 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 USB1Q9BQ65 265 aaKnown RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 C12orf49Q9H741 205 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 PLEKHF2Q9H8W4 249 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 TREM1Q9NP99 234 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 LYRM2Q9NU23 88 aaPredicted RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 UQCC1Q9NVA1 299 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 DLL3Q9NYJ7 618 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 COQ3Q9NZJ6 369 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 NDRG3Q9UGV2 375 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 ZDHHC8Q9ULC8 765 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 OR2W1Q9Y3N9 320 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 KPTNQ9Y664 436 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 SPTBN5Q9NRC6 3674 aaKnown RBP5.33□□□□□ -1.56
CLN3-223ENST00000566472 SDK2Q58EX2 2172 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 TRIOBPQ9H2D6 2365 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 NCKAP5O14513 1909 aa5.33□□□□□ -1.56
CLN3-223ENST00000566472 NCOA6Q14686 2063 aaPredicted RBP5.32□□□□□ -1.56
CLN3-223ENST00000566472 IGKV1-6A0A0C4DH72 117 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 A0A1B0GU03 582 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 A0A1B0GW64 132 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 NKX2-6A6NCS4 301 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 BTBD17A6NE02 478 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 PRR33A8MZF0 331 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 UMAD1C9J7I0 102 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 RNASEK-C17orf49H0YIS7 233 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.32□□□□□ -1.56
CLN3-223ENST00000566472 TOR1AO14656 332 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 PGLYRP1O75594 196 aaPredicted RBP5.32□□□□□ -1.56
CLN3-223ENST00000566472 HEXAP06865 529 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 FTH1P19P0C7X4 201 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 PGA5P0DJD9 388 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 ZNF44P15621 663 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 MUC1P15941 1255 aaPredicted RBP5.32□□□□□ -1.56
CLN3-223ENST00000566472 IGHV1-2P23083 117 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 CA6P23280 308 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 F2RP25116 425 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 HOXC12P31275 282 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 VAMP2P63027 116 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 FLI1Q01543 452 aaPredicted RBP5.32□□□□□ -1.56
CLN3-223ENST00000566472 ID3Q02535 119 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 ZNF146Q15072 292 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 TSC22D1Q15714 1073 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 RNFT1Q5M7Z0 435 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 ATRAIDQ6UW56 229 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 MEX3BQ6ZN04 569 aaKnown RBP5.32□□□□□ -1.56
CLN3-223ENST00000566472 ZNF818PQ6ZRF7 136 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 Q6ZT83 130 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 PUSL1Q8N0Z8 303 aaKnown RBP5.32□□□□□ -1.56
CLN3-223ENST00000566472 SUMF1Q8NBK3 374 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 ZBTB34Q8NCN2 500 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 OR10V1Q8NGI7 309 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 OR10J5Q8NHC4 309 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 FAM216AQ8WUB2 273 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 WNT2BQ93097 391 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 LSM10Q969L4 123 aaKnown RBP5.32□□□□□ -1.56
CLN3-223ENST00000566472 HS3ST6Q96QI5 342 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 ADAT1Q9BUB4 502 aaKnown RBP5.32□□□□□ -1.56
CLN3-223ENST00000566472 TOLLIPQ9H0E2 274 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 HRH4Q9H3N8 390 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 SMDT1Q9H4I9 107 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 HES4Q9HCC6 221 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 ASCL3Q9NQ33 180 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 CCL28Q9NRJ3 127 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 IL36RNQ9UBH0 155 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 CACFD1Q9UGQ2 172 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 WIPI2Q9Y4P8 454 aa5.32□□□□□ -1.56
CLN3-223ENST00000566472 RANBP2P49792 3224 aaKnown RBP5.32□□□□□ -1.56
CLN3-223ENST00000566472 LAMA3Q16787 3333 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 IGKV1D-13A0A0B4J2D9 117 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 TMEM30CPA0ZSE6 113 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 ZNF891A8MT65 544 aaPredicted RBP5.31□□□□□ -1.56
CLN3-223ENST00000566472 RNF212BA8MTL3 300 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 FAM157AC9JC47 383 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 K7N7A8 449 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 WRBO00258 174 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 SLC33A1O00400 549 aaPredicted RBP5.31□□□□□ -1.56
CLN3-223ENST00000566472 HSD17B6O14756 317 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 SH2D1BO14796 132 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 HSPA12AO43301 675 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 ADAM20O43506 726 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 LILRA1O75019 489 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 CEACAM4O75871 244 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 DFFBO76075 338 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 ZNF205O95201 554 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 TSPAN15O95858 294 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 OR2H2O95918 312 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 IGKV3-15P01624 115 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 IGKV1-13P0DP09 117 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 CEACAM1P13688 526 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 CTRB1P17538 263 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 KITLGP21583 273 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 LMO1P25800 156 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 PAX6P26367 422 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 CAMLGP49069 296 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 IDH3GP51553 393 aaPredicted RBP5.31□□□□□ -1.56
CLN3-223ENST00000566472 MZT1Q08AG7 82 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 PEA15Q15121 130 aa5.31□□□□□ -1.56
CLN3-223ENST00000566472 GUCA2BQ16661 112 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms