RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 MPZL2O60487 215 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 IGHV3-53P01767 116 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 HLA-AP01891 365 aaKnown RBP2.06□□□□□ -2.08
VPS29-205ENST00000548539 AKR1C4P17516 323 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 COL8A2P25067 703 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 KDELR2P33947 212 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 RAB2AP61019 212 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 BCL2A1Q16548 175 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 WDR59Q6PJI9 974 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 CYHR1Q6ZMK1 362 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 ZNF664Q8N3J9 261 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 SLC25A45Q8N413 288 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 ACBD4Q8NC06 268 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 ANGPTL6Q8NI99 470 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 UBE2WQ96B02 151 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 TVP23CQ96ET8 276 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 TMEM56Q96MV1 263 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 FAM210AQ96ND0 272 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 PRSS27Q9BQR3 290 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 POTEKPQ9BYX7 375 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 SLC19A3Q9BZV2 496 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 CHMP4BQ9H444 224 aaKnown RBP2.06□□□□□ -2.08
VPS29-205ENST00000548539 U3KQK5 164 aa2.06□□□□□ -2.08
VPS29-205ENST00000548539 POLR3AO14802 1390 aaPredicted RBP2.06□□□□□ -2.08
VPS29-205ENST00000548539 PLXNB3Q9ULL4 1909 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 A0A1B0GTI1 187 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 OR5H14A6NHG9 310 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 ARGFXA6NJG6 315 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 MKRN2OSH3BPM6 223 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 GPR171O14626 319 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 FGF16O43320 207 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 POP7O75817 140 aaKnown RBP2.05□□□□□ -2.08
VPS29-205ENST00000548539 EPPINO95925 133 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 P0C880 135 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 ZNF708P17019 499 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 EVI2BP34910 448 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 ACTR1BP42025 376 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 HSPA13P48723 471 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 FOXA1P55317 472 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 MP68P56378 58 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 DMTNQ08495 405 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 TMEM249Q2WGJ8 235 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 RBM48Q5RL73 367 aaKnown RBP2.05□□□□□ -2.08
VPS29-205ENST00000548539 FAM162BQ5T6X4 162 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 SSX7Q7RTT5 188 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 TCF23Q7RTU1 214 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 CPNE9Q8IYJ1 553 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 EIF4E3Q8N5X7 224 aaKnown RBP2.05□□□□□ -2.08
VPS29-205ENST00000548539 ATP6V1C2Q8NEY4 427 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 CLDN23Q96B33 292 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 TM2D3Q9BRN9 247 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 EBPLQ9BY08 206 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 ABCG5Q9H222 651 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 KCNIP2Q9NS61 270 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 DMAC2Q9NW81 257 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 CD300AQ9UGN4 299 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 SSH2Q76I76 1423 aa2.05□□□□□ -2.08
VPS29-205ENST00000548539 GGTLC3B5MD39 225 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 J3QLI3 93 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 SCN2BO60939 215 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 ATRNO75882 1429 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 CDK14O94921 469 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 PDYNP01213 254 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 ATF1P18846 271 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 RCVRNP35243 200 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 LRPPRCP42704 1394 aaKnown RBP2.04□□□□□ -2.08
VPS29-205ENST00000548539 CD151P48509 253 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 SLAMF1Q13291 335 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 NID2Q14112 1375 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 CASP8Q14790 479 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 ZNHIT3Q15649 155 aaPredicted RBP2.04□□□□□ -2.08
VPS29-205ENST00000548539 XKRXQ6PP77 449 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 COMTD1Q86VU5 262 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 CRLF3Q8IUI8 442 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 OR11L1Q8NGX0 322 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 DYNC2LI1Q8TCX1 351 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 CCDC12Q8WUD4 166 aaPredicted RBP2.04□□□□□ -2.08
VPS29-205ENST00000548539 OR2D2Q9H210 308 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 ASCL3Q9NQ33 180 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 OR5V1Q9UGF6 321 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 SCML1Q9UN30 329 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 ZNF443Q9Y2A4 671 aaPredicted RBP2.04□□□□□ -2.08
VPS29-205ENST00000548539 GMEB1Q9Y692 573 aa2.04□□□□□ -2.08
VPS29-205ENST00000548539 THADAQ6YHU6 1953 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 MIA3Q5JRA6 1907 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 USP42Q9H9J4 1324 aaKnown RBP2.03□□□□□ -2.08
VPS29-205ENST00000548539 D6RAR5 112 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 AQP9O43315 295 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 CBR3O75828 277 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 CPSF4O95639 269 aaKnown RBP2.03□□□□□ -2.08
VPS29-205ENST00000548539 RAB36O95755 333 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 GPR75O95800 540 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 ASS1P00966 412 aaKnown RBP2.03□□□□□ -2.08
VPS29-205ENST00000548539 GUSBP08236 651 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 CTLA4P16410 223 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 PVALBP20472 110 aaPredicted RBP2.03□□□□□ -2.08
VPS29-205ENST00000548539 RAB8AP61006 207 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 Q6ZQT7 251 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 MUC15Q8N387 334 aa2.03□□□□□ -2.08
VPS29-205ENST00000548539 FER1L6-AS1Q8NA97 138 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms