RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TRAPPC6BQ86SZ2 158 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 SBSPONQ8IVN8 264 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 STPG2Q8N412 459 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 EMG1Q92979 244 aaKnown RBP10.07□□□□□ -0.8
USP28-212ENST00000544750 FGGYQ96C11 551 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 MYCBPQ99417 103 aaPredicted RBP10.07□□□□□ -0.8
USP28-212ENST00000544750 VCXQ9H320 206 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 GAL3ST2Q9H3Q3 398 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 PLCXD1Q9NUJ7 323 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 RBFOX1Q9NWB1 397 aaKnown RBP10.07□□□□□ -0.8
USP28-212ENST00000544750 FKBP14Q9NWM8 211 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 PSORS1C1Q9UIG5 152 aa10.07□□□□□ -0.8
USP28-212ENST00000544750 EXOSC1Q9Y3B2 195 aaKnown RBP10.07□□□□□ -0.8
USP28-212ENST00000544750 SIRT4Q9Y6E7 314 aaPredicted RBP10.07□□□□□ -0.8
USP28-212ENST00000544750 TRBV2A0A0J9YWF9 115 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 IRGMA1A4Y4 181 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 LINC01548A6NM66 108 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 TMEM212A6NML5 194 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 SERPINE3A8MV23 424 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 H0YJX3 145 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 INMTO95050 263 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 FAM106CPP0CH98 169 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 ATF1P18846 271 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 MNDAP41218 407 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 NPBWR2P48146 333 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 FUT6P51993 359 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 ST3GAL4Q11206 333 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 KIR2DS1Q14954 304 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 DEFB136Q30KP8 78 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 Q8IYB0 196 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 FAM58AQ8N1B3 248 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 RNF152Q8N8N0 203 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 DNAAF1Q8NEP3 725 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 OR5M8Q8NGP6 311 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 OR13C3Q8NGS6 347 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 OR5AK2Q8NH90 309 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 TMEM80Q96HE8 168 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 CNOT2Q9NZN8 540 aaKnown RBP10.06□□□□□ -0.8
USP28-212ENST00000544750 SLC7A11Q9UPY5 501 aa10.06□□□□□ -0.8
USP28-212ENST00000544750 ZNF256Q9Y2P7 627 aaPredicted RBP10.06□□□□□ -0.8
USP28-212ENST00000544750 TRGV10A0A0A0MS01 117 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 A0A1W2PPI3 338 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 OGG1O15527 345 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 RPLP1P05386 114 aaKnown RBP10.05□□□□□ -0.8
USP28-212ENST00000544750 CGB3P0DN86 165 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 CGB7P0DN87 165 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 LYL1P12980 280 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 ZNF20P17024 532 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 BCL3P20749 454 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 C21orf33P30042 268 aaPredicted RBP10.05□□□□□ -0.8
USP28-212ENST00000544750 CDX1P47902 265 aaPredicted RBP10.05□□□□□ -0.8
USP28-212ENST00000544750 GLIPR1P48060 266 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 RAB25P57735 213 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 SLC35B1P78383 322 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 FHL3Q13643 280 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 C17orf58Q2M2W7 97 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 CCDC58Q4VC31 144 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 SPIN3Q5JUX0 258 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 TEX38Q6PEX7 206 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 SLC35E3Q7Z769 313 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 PARP16Q8N5Y8 322 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 OR13C9Q8NGT0 318 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 OR8U1Q8NH10 309 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 OR52N1Q8NH53 320 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 HAVCR2Q8TDQ0 301 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 BORCS8Q96FH0 119 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 KRTAP17-1Q9BYP8 105 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 SMAD5-AS1Q9Y6J3 95 aa10.05□□□□□ -0.8
USP28-212ENST00000544750 EFCAB10A6NFE3 127 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 SEC14L6B5MCN3 397 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 TOR1AO14656 332 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 SERPINA3P01011 423 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 MT-ND2P03891 347 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 MYL12AP19105 171 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 RBP2P50120 134 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 PRRX1P54821 245 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 AESQ08117 197 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 DMKNQ6E0U4 476 aaPredicted RBP10.04□□□□□ -0.8
USP28-212ENST00000544750 ZNF529Q6P280 563 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 RPL22L1Q6P5R6 122 aaKnown RBP10.04□□□□□ -0.8
USP28-212ENST00000544750 TMPRSS11AQ6ZMR5 421 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 LCNL1Q6ZST4 164 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 AHSA2Q719I0 299 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 DRAM1Q8N682 238 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 BPIFB6Q8NFQ5 453 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 OR56B4Q8NH76 319 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 SPSB1Q96BD6 273 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 SMIM19Q96E16 107 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 COQ2Q96H96 371 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 PGLYRP3Q96LB9 341 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 OPALINQ96PE5 141 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 SPACA5Q96QH8 159 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 COMMD4Q9H0A8 199 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 ZCCHC4Q9H5U6 513 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 PCDHB16Q9NRJ7 776 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 PAK1IP1Q9NWT1 392 aaPredicted RBP10.04□□□□□ -0.8
USP28-212ENST00000544750 BABAM2Q9NXR7 383 aa10.04□□□□□ -0.8
USP28-212ENST00000544750 IGKV1-12A0A0C4DH73 117 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 ODAMA1E959 279 aa10.03□□□□□ -0.8
USP28-212ENST00000544750 ZNF729A6NN14 1252 aaPredicted RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms