RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SPAG1Q07617 926 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 WDR43Q15061 677 aaKnown RBP eCLIP1.68□□□□□ -2.14
CD44-233ENST00000531141 KRTAP6-3Q3LI67 103 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 FBXO48Q5FWF7 155 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 TPRG1LQ5T0D9 272 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 PLCXD3Q63HM9 321 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 ULK3Q6PHR2 472 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 TRMT10CQ7L0Y3 403 aaKnown RBP1.68□□□□□ -2.14
CD44-233ENST00000531141 PDPNQ86YL7 162 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 LRRC8AQ8IWT6 810 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 DAW1Q8N136 415 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 KIF2BQ8N4N8 673 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 TRAM1L1Q8N609 369 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 SPERTQ8NA61 448 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 DEFB124Q8NES8 71 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 ZNF420Q8TAQ5 688 aaPredicted RBP1.68□□□□□ -2.14
CD44-233ENST00000531141 GPX8Q8TED1 209 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 PEX13Q92968 403 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 NAT6Q93015 286 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 CLDN23Q96B33 292 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 ZNF649Q9BS31 505 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 MS4A8Q9BY19 250 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 TRIM4Q9C037 500 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 ARV1Q9H2C2 271 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 XKR8Q9H6D3 395 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 SND1-IT1Q9HBX3 110 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 RPRD1BQ9NQG5 326 aaKnown RBP1.68□□□□□ -2.14
CD44-233ENST00000531141 INIPQ9NRY2 104 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 CA10Q9NS85 328 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 STX18Q9P2W9 335 aaKnown RBP1.68□□□□□ -2.14
CD44-233ENST00000531141 Q9Y3F1 56 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 BOD1L1Q8NFC6 3051 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 ROBO3Q96MS0 1386 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 CACNA1EQ15878 2313 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 PRR14LQ5THK1 2151 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 GREB1Q4ZG55 1949 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 ADGRG4Q8IZF6 3080 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 HIVEP1P15822 2718 aa1.68□□□□□ -2.14
CD44-233ENST00000531141 SPTBN1Q01082 2364 aaKnown RBP1.67□□□□□ -2.14
CD44-233ENST00000531141 MICAL3Q7RTP6 2002 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 ZBED9Q6R2W3 1325 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 OTOGQ6ZRI0 2925 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 NOTCH1P46531 2555 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 CELSR1Q9NYQ6 3014 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 MED13LQ71F56 2210 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 DOCK1Q14185 1865 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 NLRC5Q86WI3 1866 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 ANKHD1Q8IWZ3 2542 aaKnown RBP1.67□□□□□ -2.14
CD44-233ENST00000531141 ICE1Q9Y2F5 2266 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 TRAV8-4A0A0B4J246 113 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 A0A0G2JMP0 313 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 A0A0X1KG70 313 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 HACD1B0YJ81 288 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 H3BN98 237 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 RNF113AO15541 343 aaKnown RBP1.67□□□□□ -2.14
CD44-233ENST00000531141 OTCP00480 354 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 GCGP01275 180 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 P01737 135 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 SLC35G6P0C7Q6 338 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 ARL2P36404 184 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 RAB11AP62491 216 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 RPL18AQ02543 176 aaKnown RBP1.67□□□□□ -2.14
CD44-233ENST00000531141 MEF2CQ06413 473 aaPredicted RBP1.67□□□□□ -2.14
CD44-233ENST00000531141 DOC2AQ14183 400 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 SYCP1Q15431 976 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 RAB11BQ15907 218 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 LINC00336Q6ZUF6 198 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 CMTM8Q8IZV2 173 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 PROKR2Q8NFJ6 384 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 OR4C13Q8NGP0 309 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 OR10Z1Q8NGY1 313 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 TMEM234Q8WY98 164 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 ISOC2Q96AB3 205 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 YIPF6Q96EC8 236 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 BCL7BQ9BQE9 202 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 PLA2G12AQ9BZM1 189 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 ZNF302Q9NR11 478 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 ADA2Q9NZK5 511 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 VAX2Q9UIW0 290 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 PPIL1Q9Y3C6 166 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 PKD1L1Q8TDX9 2849 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 PLXNB3Q9ULL4 1909 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 GOLGA4Q13439 2230 aaKnown RBP1.67□□□□□ -2.14
CD44-233ENST00000531141 ASCC3Q8N3C0 2202 aaKnown RBP1.67□□□□□ -2.14
CD44-233ENST00000531141 C2orf16Q68DN1 1984 aa1.67□□□□□ -2.14
CD44-233ENST00000531141 STAB1Q9NY15 2570 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 FBN1P35555 2871 aaKnown RBP1.66□□□□□ -2.14
CD44-233ENST00000531141 ATG2AQ2TAZ0 1938 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 MIA3Q5JRA6 1907 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 KNTC1P50748 2209 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 RTTNQ86VV8 2226 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 TRAV8-6A0A0B4J262 113 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 A0A1B0GTQ1 180 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 LINC00854A0A1B0GVQ3 168 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 ZNF879B4DU55 563 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 E2F6O75461 281 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 KCNK2O95069 426 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 SMC2O95347 1197 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 KLK1P06870 262 aa1.66□□□□□ -2.14
CD44-233ENST00000531141 IVLP07476 585 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms