RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 DEFA1P59665 94 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 DEFA3P59666 94 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 OR2B8PP59922 312 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 GNG3P63215 75 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 CDK5Q00535 292 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 PRKCDQ05655 676 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 PLCXD2Q0VAA5 305 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 PJVKQ0ZLH3 352 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 OR5I1Q13606 314 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 KLF5Q13887 457 aaPredicted RBP2.69□□□□□ -1.98
CD44-217ENST00000525348 NEDD8Q15843 81 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 POU2AF1Q16633 256 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 LRRC26Q2I0M4 334 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 TFDP3Q5H9I0 405 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 MS4A13Q5J8X5 152 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 LDLRAD2Q5SZI1 272 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 C1orf220Q5T0J3 134 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 PRSS54Q6PEW0 395 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 CD164L2Q6UWJ8 174 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 ENPP6Q6UWR7 440 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 FAM131AQ6UXB0 335 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 C2orf66Q6UXQ4 117 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 MBOAT2Q6ZWT7 520 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 CROCCP2Q86T23 111 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 DOLPP1Q86YN1 238 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 CMTM1Q8IZ96 169 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 ZNF676Q8N7Q3 588 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 C15orf54Q8N8G6 183 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 ZNF738Q8NE65 137 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 SLC30A7Q8NEW0 376 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 OR4S1Q8NGB4 309 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 OR4E2Q8NGC2 313 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 OR10AD1Q8NGE0 317 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 OR4D9Q8NGE8 314 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 OR2Y1Q8NGV0 311 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 OR2T4Q8NH00 348 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 OR2AE1Q8NHA4 323 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 PTX4Q96A99 478 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 APOBEC3DQ96AK3 386 aaPredicted RBP2.69□□□□□ -1.98
CD44-217ENST00000525348 TADA1Q96BN2 335 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 ROPN1LQ96C74 230 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 FLYWCH2Q96CP2 140 aaKnown RBP2.69□□□□□ -1.98
CD44-217ENST00000525348 SEH1LQ96EE3 360 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 ZFP3Q96NJ6 502 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 MS4A4EQ96PG1 132 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 SULT4A1Q9BR01 284 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 ACTR3CQ9C0K3 210 aaPredicted RBP2.69□□□□□ -1.98
CD44-217ENST00000525348 NXF5Q9H1B4 397 aaKnown RBP2.69□□□□□ -1.98
CD44-217ENST00000525348 CLMPQ9H6B4 373 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 CALML5Q9NZT1 146 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 UBQLN1Q9UMX0 589 aaKnown RBP2.69□□□□□ -1.98
CD44-217ENST00000525348 SAMD4AQ9UPU9 718 aaKnown RBP2.69□□□□□ -1.98
CD44-217ENST00000525348 TRAPPC4Q9Y296 219 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 CARHSP1Q9Y2V2 147 aaKnown RBP2.69□□□□□ -1.98
CD44-217ENST00000525348 MEMO1Q9Y316 297 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 EXOSC1Q9Y3B2 195 aaKnown RBP2.69□□□□□ -1.98
CD44-217ENST00000525348 SCN4AP35499 1836 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 KIF13BQ9NQT8 1826 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 MICAL3Q7RTP6 2002 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 LTN1O94822 1766 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 SBF1O95248 1867 aa2.69□□□□□ -1.98
CD44-217ENST00000525348 PTPRJQ12913 1337 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 TOGARAM1Q9Y4F4 1720 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 LOC100130705A0A1B0GUX0 176 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 TMEM269A0A1B0GVZ9 245 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 WI2-2373I1.2A0A1W2PRP0 233 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 PPP5D1E7EU14 171 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 UBFD1O14562 309 aaKnown RBP2.68□□□□□ -1.98
CD44-217ENST00000525348 OR1F1O43749 312 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 AIREO43918 545 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 ORM1P02763 201 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 FABP3P05413 133 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 MPC1LP0DKB6 136 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 OR5H8P0DN80 308 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 HIST1H1EP10412 219 aaKnown RBP2.68□□□□□ -1.98
CD44-217ENST00000525348 F2RP25116 425 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 GABRR2P28476 465 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 S100A2P29034 98 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 HTR1FP30939 366 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 POLR2IP36954 125 aaKnown RBP2.68□□□□□ -1.98
CD44-217ENST00000525348 UQCRFS1P47985 274 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 TAS2R43P59537 309 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 PLP1P60201 277 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 RPS4XP62701 263 aaKnown RBP2.68□□□□□ -1.98
CD44-217ENST00000525348 DEFA5Q01523 94 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 C2orf80Q0P641 193 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 HERPUD1Q15011 391 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 JOSD1Q15040 202 aaPredicted RBP2.68□□□□□ -1.98
CD44-217ENST00000525348 PEA15Q15121 130 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 MAPK14Q16539 360 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 LGALSLQ3ZCW2 172 aaPredicted RBP2.68□□□□□ -1.98
CD44-217ENST00000525348 TMEM128Q5BJH2 165 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 SAMD4BQ5PRF9 694 aaKnown RBP2.68□□□□□ -1.98
CD44-217ENST00000525348 LY6G6FQ5SQ64 297 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 COL5A1-AS1Q5SY13 56 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 AKR1C8PQ5T2L2 129 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 TPTE2P1Q5T6R2 138 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 CPTPQ5TA50 214 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 XAF1Q6GPH4 301 aa2.68□□□□□ -1.98
CD44-217ENST00000525348 NIPAL3Q6P499 406 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms