RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ZFP82Q8N141 532 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 COMMD1Q8N668 190 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SMCO4Q9NRQ5 59 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 C19orf12Q9NSK7 152 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TCFL5Q9UL49 500 aa13.82□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 C3orf85A0A1B0GTC6 90 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 RPL36A-HNRNPH2H7BZ11 118 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 ZNHIT1O43257 154 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 PAX6P26367 422 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 GNRHRP30968 328 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FOXO1Q12778 655 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TGIF1Q15583 401 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 MEX3BQ6ZN04 569 aaKnown RBP13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 RNASE11Q8TAA1 199 aaKnown RBP13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TMEM45BQ96B21 275 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 HS3ST6Q96QI5 342 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 CLCC1Q96S66 551 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 PARPBPQ9NWS1 579 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FREM1Q5H8C1 2179 aa13.81□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 NKX2-6A6NCS4 301 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TRDCB7Z8K6 153 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 F10P00742 488 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 BCL3P20749 454 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 GDF1P27539 372 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 AKR1C3P42330 323 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 CAMLGP49069 296 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 ZNF616Q08AN1 781 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 HABP2Q14520 560 aaPredicted RBP13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 Q6ZS49 121 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 EXTL1Q92935 676 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 POM121Q96HA1 1249 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SLC7A10Q9NS82 523 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 LUZP4Q9P127 313 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TPRP12270 2363 aaKnown RBP13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 EWSR1Q01844 656 aaKnown RBP eCLIP13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SRSF6Q13247 344 aaKnown RBP13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 HMGN3Q15651 99 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 AKIRIN2Q53H80 203 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 LBHQ53QV2 105 aaPredicted RBP13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TIPARPQ7Z3E1 657 aaKnown RBP13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 DMRTC2Q8IXT2 367 aaPredicted RBP13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 C15orf54Q8N8G6 183 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 HSD17B11Q8NBQ5 300 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 PSMF1Q92530 271 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 BOD1Q96IK1 185 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 STRADBQ9C0K7 418 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TMEM222Q9H0R3 208 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 RYDENQ9NUL5 291 aaKnown RBP13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 CACNA1GO43497 2377 aa13.8□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 ASCL1P50553 236 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 OR56B2PQ8NGI1 322 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 C14orf79Q96F83 325 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TMEM56Q96MV1 263 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 REPIN1Q9BWE0 567 aaKnown RBP13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 Q9N2K0 584 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 STRAPQ9Y3F4 350 aaKnown RBP13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TMEM56-RWDD3S4R434 201 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A10PA6NDY2 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A18PA6NE21 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A16PA6NEW6 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM24AA6NFZ4 105 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A20PA6NIJ5 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A8PA6NJQ4 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A7PA6NKC0 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A22PA8MWA6 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A12PA8MX19 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A5PA8MXJ8 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A23PA8MXZ1 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 C1orf196B1AJZ1 125 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 B4E171 279 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 CDS2O95674 445 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 NAPSAO96009 420 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A15PP0C7V4 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A13PP0C7W8 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A14PP0C7W9 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM90A24PP0C7X0 464 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 ARF1P84077 181 aaKnown RBP13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 NRN1LQ496H8 165 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 DPPA2Q7Z7J5 298 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TBC1D26Q86UD7 250 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 CT55Q8WUE5 264 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TCTEX1D2Q8WW35 142 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 HIST1H2BAQ96A08 127 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SLAMF9Q96A28 289 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 LURAP1Q96LR2 239 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 NEU1Q99519 415 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 RFNGQ9Y644 331 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 URB1O60287 2271 aaKnown RBP13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 PIEZO2Q9H5I5 2752 aa13.79□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 TNRC6AQ8NDV7 1962 aaKnown RBP13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 IGKV3D-15A0A087WSY6 115 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 MED19A0JLT2 244 aaPredicted RBP13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 K7N7A8 449 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 CYB561P49447 251 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 RAB5CP51148 216 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 PRDX4Q13162 271 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 AWAT1Q58HT5 328 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 C9orf152Q5JTZ5 239 aa13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 SELENOHQ8IZQ5 122 aaKnown RBP13.78□□□□□ -0.2
MSH5-SAPCD1-208ENST00000498473 FAM185AQ8N0U4 392 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms