RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 FAM169BQ8N8A8 192 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 RAB33BQ9H082 229 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 TMEM131Q92545 1883 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 ZC3H12DA2A288 527 aaKnown RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 SNURFLB1AK76 121 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 ZNF273Q14593 569 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 SPPL3Q8TCT6 385 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 SRD5A3Q9H8P0 318 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 TNRC6AQ8NDV7 1962 aaKnown RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 DNAL4O96015 105 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 JAG1P78504 1218 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 HYAL1Q12794 435 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 TWIST1Q15672 202 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 C9orf152Q5JTZ5 239 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 PAPPA-AS1Q5QFB9 102 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 KIRREL2Q6UWL6 708 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 BTLAQ7Z6A9 289 aa11.81□□□□□ -0.52
COL6A3-209ENST00000472056 YRDCQ86U90 279 aaKnown RBP11.81□□□□□ -0.52
COL6A3-209ENST00000472056 FAM90A26D6RGX4 464 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 NGFP01138 241 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 CDX1P47902 265 aaPredicted RBP11.8□□□□□ -0.52
COL6A3-209ENST00000472056 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 DDA1Q9BW61 102 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 ADAP1O75689 374 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 PRSS36Q5K4E3 855 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 ERRFI1Q9UJM3 462 aaPredicted RBP11.8□□□□□ -0.52
COL6A3-209ENST00000472056 UFC1Q9Y3C8 167 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 B3GALT4O96024 378 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 GJB3O75712 270 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 TMEM136Q6ZRR5 245 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 MRPS18AQ9NVS2 196 aaKnown RBP11.8□□□□□ -0.52
COL6A3-209ENST00000472056 PAPPA2Q9BXP8 1791 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 NDUFB3O43676 98 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 SPATA45Q537H7 98 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 SLC25A34Q6PIV7 304 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 C17orf99Q6UX52 265 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 MUC15Q8N387 334 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 SGMS2Q8NHU3 365 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 CLN8Q9UBY8 286 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 IL17BQ9UHF5 180 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 TRAV9-1A0A075B6T8 112 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 GLI4P10075 376 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 KIR3DL2P43630 455 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 FNDC7Q5VTL7 733 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 DOK5Q9P104 306 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 ASB1Q9Y576 335 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 SRSF10O75494 262 aaKnown RBP11.8□□□□□ -0.52
COL6A3-209ENST00000472056 C12orf49Q9H741 205 aa11.8□□□□□ -0.52
COL6A3-209ENST00000472056 HELZP42694 1942 aaKnown RBP11.79□□□□□ -0.52
COL6A3-209ENST00000472056 H3BMH7 237 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 GABRA6Q16445 453 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 OR1P1Q8NH06 330 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 SGK494Q96LW2 274 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 LOC285556D6RIA3 1793 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 EDN3P14138 238 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 PXNP49023 591 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-209ENST00000472056 CBLN2Q8IUK8 224 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 OR10AG1Q8NH19 301 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 PCP4P48539 62 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 TBC1D26Q86UD7 250 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 OR2D2Q9H210 308 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 KIR2DL1P43626 348 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-209ENST00000472056 KIR2DL2P43627 348 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-209ENST00000472056 HOXA4Q00056 320 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-209ENST00000472056 Q56UQ5 140 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 RBPMS2Q6ZRY4 209 aaKnown RBP11.79□□□□□ -0.52
COL6A3-209ENST00000472056 TP53I13Q8NBR0 393 aaPredicted RBP11.79□□□□□ -0.52
COL6A3-209ENST00000472056 FBLL1A6NHQ2 334 aaKnown RBP11.79□□□□□ -0.52
COL6A3-209ENST00000472056 LPAR6P43657 344 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 GHITMQ9H3K2 345 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 PPIL1Q9Y3C6 166 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 PAPPAQ13219 1627 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 ARG1P05089 322 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 GZMHP20718 246 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 LGALS7P47929 136 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 GUCA2AQ02747 115 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 KCNAB1Q14722 419 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 LINC00518Q8N0U6 118 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 NEUROG1Q92886 237 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 CNTD2Q9H8S5 307 aa11.79□□□□□ -0.52
COL6A3-209ENST00000472056 TGIF2-C20orf24A0A0A6YYL0 155 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 ONECUT2O95948 504 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 HLA-DRB1P01911 266 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 ZNF117Q03924 483 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 HES3Q5TGS1 186 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 TREM2Q9NZC2 230 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 MTCH2Q9Y6C9 303 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 NPIPB8E9PQR5 432 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 TNFSF11O14788 317 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 KLKB1P03952 638 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 KLRB1Q12918 225 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 NCMAPQ5T1S8 102 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 ACSM6Q6P461 480 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 MRAP2Q96G30 205 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 C20orf141Q9NUB4 165 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 TYMSP04818 313 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 SPACA5Q96QH8 159 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 RASL11BQ9BPW5 248 aa11.78□□□□□ -0.52
COL6A3-209ENST00000472056 TPSD1Q9BZJ3 242 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms