RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 DCAKDQ8WVC6 231 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 KLF6Q99612 283 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 HSD17B10Q99714 261 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 SFXN3Q9BWM7 321 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 DCSTAMPQ9H295 470 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 PKIGQ9Y2B9 76 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 NUP155O75694 1391 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 RLFQ13129 1914 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 MYH15Q9Y2K3 1946 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 IGHV3-16A0A0C4DH30 117 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 A0A1B0GV50 99 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 C5orf49A4QMS7 147 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF878C9JN71 531 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 G3V2T6 193 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 PDE6DO43924 150 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 KBTBD11O94819 623 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 OR2A4O95047 310 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 NTN1O95631 604 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 CBR1P16152 277 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 NELFEP18615 380 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 HIST1H1TP22492 207 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 GFERP55789 205 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 TMEM33P57088 247 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ESRRGP62508 458 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 HPCAP84074 193 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 RUNX3Q13761 415 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 TWIST1Q15672 202 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 C6orf99Q4VX62 202 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ORMDL2Q53FV1 153 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ARL9Q6T311 187 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 DCUN1D4Q92564 292 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC35B4Q969S0 331 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 BORCS7Q96B45 105 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 RPUSD4Q96CM3 377 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 GALNT14Q96FL9 552 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 OR10C1Q96KK4 312 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 OR2A7Q96R45 310 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ARHGDIGQ99819 225 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 TMEM243Q9BU79 118 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 POMKQ9H5K3 350 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF226Q9NYT6 803 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 CLCF1Q9UBD9 225 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 CACNG5Q9UF02 275 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 PYGO1Q9Y3Y4 419 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 GOLGA3Q08378 1498 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 TIAM1Q13009 1591 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 KDM5AP29375 1690 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 CACNA1FO60840 1977 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 NFASCO94856 1347 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 THSD7BQ9C0I4 1608 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 COL24A1Q17RW2 1714 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ABCA3Q99758 1704 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 MLH3Q9UHC1 1453 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 A0A1W2PP64 1363 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 M0QZK8 103 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 HMGB3O15347 200 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 HCRTR1O43613 425 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 CYB5R3P00387 301 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 REG1AP05451 166 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 SULT1A3P0DMM9 295 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 SULT1A4P0DMN0 295 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ZBTB25P24278 435 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 GADD45AP24522 165 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ELK4P28324 431 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 H2BFSP57053 126 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 PSG4Q00888 419 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 MS4A2Q01362 244 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 GSG1Q2KHT4 349 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 TRMT12Q53H54 448 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF561Q8N587 486 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 EIF4E3Q8N5X7 224 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 SPPL2BQ8TCT7 592 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 NTN5Q8WTR8 489 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 ITLN1Q8WWA0 313 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 AURKBQ96GD4 344 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 SLC35E1Q96K37 410 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 PBDC1Q9BVG4 233 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 EIF5A2Q9GZV4 153 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 BOLA2Q9H3K6 86 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 RBFOX1Q9NWB1 397 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 GSKIPQ9P0R6 139 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 VPREB3Q9UKI3 123 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 BTRCQ9Y297 605 aa1.81□□□□□ -2.12
CCDC88A-208ENST00000444458 TRAV8-3A0A0A6YYJ7 113 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 LOC389332A0A1B0GUA5 103 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF705GA8MUZ8 300 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 FAM220BPB1ANY3 271 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 D6RAR5 112 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 M0QYV0 167 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 M0R1X1 148 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 GPR31O00270 319 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 BHLHE40O14503 412 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PDCD6O75340 191 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 CTSLP07711 333 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 HIST1H3AP68431 136 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 H3F3AP84243 136 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 SAMD13Q5VXD3 122 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 SPATA31B1PQ5VZV4 182 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 ZNF343Q6P1L6 599 aa1.8□□□□□ -2.12
CCDC88A-208ENST00000444458 PAMR1Q6UXH9 720 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms