RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 YLPM1P49750 1951 aaKnown RBP7.16□□□□□ -1.26
CD44-208ENST00000428726 CACNA1AO00555 2505 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 A0A1B0GW55 424 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 OR6C6A6NF89 314 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 KIAA1324LA8MWY0 1029 aaPredicted RBP7.16□□□□□ -1.26
CD44-208ENST00000428726 M0R036 132 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 HSPA12AO43301 675 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 DUX4L2P0CJ85 424 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 DUX4L3P0CJ86 424 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 DUX4L4P0CJ87 422 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 DUX4L5P0CJ88 424 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 DUX4L6P0CJ89 424 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 DUX4L7P0CJ90 424 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 FPR2P25090 351 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 GNRHRP30968 328 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 LPAR6P43657 344 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 PCBD1P61457 104 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 POLR2GP62487 172 aaKnown RBP eCLIP7.16□□□□□ -1.26
CD44-208ENST00000428726 CYCSP99999 105 aaKnown RBP7.16□□□□□ -1.26
CD44-208ENST00000428726 EDDM3AQ14507 147 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 TMEM268Q5VZI3 342 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 DEFB108BQ8NET1 73 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 OR1K1Q8NGR3 316 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 OR10Z1Q8NGY1 313 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 PIK3IP1Q96FE7 263 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 HIST1H2AAQ96QV6 131 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 ABHD14AQ9BUJ0 271 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 OBP2BQ9NPH6 170 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 RPS10P5Q9NQ39 176 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 ABI3Q9P2A4 366 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 DUX4Q9UBX2 424 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 ZNF391Q9UJN7 358 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 KCNS2Q9ULS6 477 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 TM4SF5O14894 197 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 TXNL1O43396 289 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 WDR1O75083 606 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 SFT2D2O95562 160 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 OR8U9P0C7N5 309 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 CD46P15529 392 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 CNN3Q15417 329 aaKnown RBP7.16□□□□□ -1.26
CD44-208ENST00000428726 PEG10Q86TG7 708 aaKnown RBP7.16□□□□□ -1.26
CD44-208ENST00000428726 LHFPL1Q86WI0 220 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 SLC30A7Q8NEW0 376 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 OR8U1Q8NH10 309 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 IP6K3Q96PC2 410 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 CLCC1Q96S66 551 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 USB1Q9BQ65 265 aaKnown RBP7.16□□□□□ -1.26
CD44-208ENST00000428726 NMES1Q9C002 83 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 RHOFQ9HBH0 211 aa7.16□□□□□ -1.26
CD44-208ENST00000428726 PURGQ9UJV8 347 aaKnown RBP7.16□□□□□ -1.26
CD44-208ENST00000428726 COL27A1Q8IZC6 1860 aaPredicted RBP7.16□□□□□ -1.26
CD44-208ENST00000428726 ZNF816-ZNF321PA0A0X1KG74 233 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 A0A1W2PPE3 182 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 FAM24AA6NFZ4 105 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 ZNF708P17019 499 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 CHATP28329 748 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 APLNRP35414 380 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 MPV17P39210 176 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 DAZAP2Q15038 168 aaPredicted RBP7.15□□□□□ -1.26
CD44-208ENST00000428726 CXorf66Q5JRM2 361 aaPredicted RBP7.15□□□□□ -1.26
CD44-208ENST00000428726 SGPP2Q8IWX5 399 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 GAPTQ8N292 157 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 SVBPQ8N300 66 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 OR1J1Q8NGS3 322 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 RNASE11Q8TAA1 199 aaKnown RBP7.15□□□□□ -1.26
CD44-208ENST00000428726 CD300LFQ8TDQ1 290 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 CNTNAP3BQ96NU0 1288 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 SPRY4Q9C004 299 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 RGCCQ9H4X1 137 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 SLC2A9Q9NRM0 540 aa7.15□□□□□ -1.26
CD44-208ENST00000428726 IGHV3OR15-7A0A075B7D8 119 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 hCG_1809904A0A1W2PP81 198 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 A0A1W2PR64 198 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 A0A1W2PRV1 198 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 NKX2-6A6NCS4 301 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 TRAPPC2LH3BP13 241 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 KLRC4-KLRK1H3BQV0 150 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 TERTO14746 1132 aaKnown RBP7.15□□□□□ -1.27
CD44-208ENST00000428726 HMGB3O15347 200 aaKnown RBP7.15□□□□□ -1.27
CD44-208ENST00000428726 KLK10O43240 276 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 SFTA3P0C7M3 94 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 TPT1P13693 172 aaKnown RBP7.15□□□□□ -1.27
CD44-208ENST00000428726 F2RL1P55085 397 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 HERV-K104P61576 105 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 SURF2Q15527 256 aaPredicted RBP7.15□□□□□ -1.27
CD44-208ENST00000428726 KRTAP27-1Q3LI81 207 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 SPRNQ5BIV9 151 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 SHEQ5VZ18 495 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 ADAM5Q6NVV9 412 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 BTNL3Q6UXE8 466 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 SPAG16Q8N0X2 631 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 OR10V1Q8NGI7 309 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 LEAP2Q969E1 77 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 EIF5A2Q9GZV4 153 aaKnown RBP7.15□□□□□ -1.27
CD44-208ENST00000428726 RAB18Q9NP72 206 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 UQCC1Q9NVA1 299 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 ERRFI1Q9UJM3 462 aaPredicted RBP7.15□□□□□ -1.27
CD44-208ENST00000428726 OSGIN2Q9Y236 505 aa7.15□□□□□ -1.27
CD44-208ENST00000428726 UBE2J1Q9Y385 318 aaPredicted RBP7.15□□□□□ -1.27
CD44-208ENST00000428726 FBXO7Q9Y3I1 522 aa7.15□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms