RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 MISP3Q96FF7 219 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 NARFLQ9H6Q4 476 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 TNFRSF12AQ9NP84 129 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 CACNA1SQ13698 1873 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 A0A096LPE4 126 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 A0A1W2PPZ6 126 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 DNASE2O00115 360 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-203ENST00000409050 GNG7O60262 68 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 BGLAPP02818 100 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 TGFBR1P36897 503 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 ROM1Q03395 351 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 LRRC75BQ2VPJ9 315 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 C1orf100Q5SVJ3 147 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 DHRS13Q6UX07 377 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 DLK2Q6UY11 383 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 TMEM45BQ96B21 275 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 FLYWCH2Q96CP2 140 aaKnown RBP5.37□□□□□ -1.55
SCN1A-203ENST00000409050 AQP10Q96PS8 301 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 CHODLQ9H9P2 273 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 AP5S1Q9NUS5 200 aa5.37□□□□□ -1.55
SCN1A-203ENST00000409050 SYNGR1O43759 233 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 SRSF10O75494 262 aaKnown RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 OR2J3O76001 311 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 MT-CO3P00414 261 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 B2MP61769 119 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 PSG9Q00887 426 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 FBLIM1Q8WUP2 373 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 LSM10Q969L4 123 aaKnown RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 ALG14Q96F25 216 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 ALKBH3Q96Q83 286 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 CDX2Q99626 313 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 GGACTQ9BVM4 153 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 GP6Q9HCN6 339 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 DCAF16Q9NXF7 216 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 RCC2Q9P258 522 aaKnown RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 B4E171 279 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 BMPR1BO00238 502 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 RAB29O14966 203 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 ONECUT2O95948 504 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 SOD3P08294 240 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 TMIGD3P0DMS9 266 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 FABP2P12104 132 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 GBGT1Q8N5D6 347 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 PSMG3Q9BT73 122 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 SH3BGRL2Q9UJC5 107 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 A0A1B0GUL6 1792 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 TRBV5-5A0A0J9YX44 114 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 FAM221AA4D161 298 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 FFAR1O14842 300 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 MGST3O14880 152 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 CHST1O43916 411 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 ERVFRD-1P60508 538 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 CCL7P80098 99 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 CLEC12BQ2HXU8 276 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 LINC01559Q495D7 138 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 BHLHA15Q7RTS1 189 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 C6orf201Q7Z4U5 140 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 TGIF2LYQ8IUE0 185 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 TGIF2LXQ8IUE1 241 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 DEFB108BQ8NET1 73 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 EID2BQ96D98 161 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 SPACA5Q96QH8 159 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 SLC25A22Q9H936 323 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 MRPL22Q9NWU5 206 aaKnown RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 CISD1Q9NZ45 108 aaKnown RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 SERGEFQ9UGK8 458 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 KCNE3Q9Y6H6 103 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 NWD2Q9ULI1 1742 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 PQLC2LA1A4F0 135 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 F5H697 171 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 PMELP40967 661 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 OR3A4PP47883 348 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 RPL24P83731 157 aaKnown RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 TIAL1Q01085 375 aaKnown RBP eCLIP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 P2RY6Q15077 328 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 FAM209BQ5JX69 171 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 FAM27BQ5VT28 67 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 OLIG3Q7RTU3 272 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 ORAI1Q96D31 301 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 NRIP2Q9BQI9 281 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 OR2H1Q9GZK4 316 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 OR51M1Q9H341 326 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 HIGD1AQ9Y241 93 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 YBX2Q9Y2T7 364 aaKnown RBP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 LIPGQ9Y5X9 500 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF98A6NK75 572 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 TMEM250H0YL14 139 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 RHBDL1O75783 438 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 LCN2P80188 198 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 SRSF9Q13242 221 aaKnown RBP eCLIP5.36□□□□□ -1.55
SCN1A-203ENST00000409050 PSG5Q15238 335 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 KHDC1LQ5JSQ8 128 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 ZNF774Q6NX45 483 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 CD200R1LQ6Q8B3 271 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 ZDHHC8Q9ULC8 765 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 PAPPA2Q9BXP8 1791 aa5.36□□□□□ -1.55
SCN1A-203ENST00000409050 HYPMO75409 117 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 SCO1O75880 301 aa5.35□□□□□ -1.55
SCN1A-203ENST00000409050 S1PR2O95136 353 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms