RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 OPN4Q9UHM6 478 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 CTXN2P0C2S0 81 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 ZNF728P0DKX0 622 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 HLA-GP17693 338 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 LY6G6FQ5SQ64 297 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 DCAF12L2Q5VW00 463 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 ZNF497Q6ZNH5 498 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 MOB1BQ7L9L4 216 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 C9orf62Q8N4C0 152 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 OR5M8Q8NGP6 311 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 LRRC29Q8WV35 223 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 MOB3AQ96BX8 217 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 C12orf57Q99622 126 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 OR14J1Q9UGF5 321 aa12.56□□□□□ -0.4
CCDC47-201ENST00000225726 A0A0B4J2A0 478 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 RGS11O94810 467 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 LMO1P25800 156 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 CFHR2P36980 270 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 UCP3P55916 312 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 CYB5R2Q6BCY4 276 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 LAMTOR1Q6IAA8 161 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 GAPTQ8N292 157 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 OR2V2Q96R30 315 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 SHPKQ9UHJ6 478 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 DSPP15924 2871 aaKnown RBP12.55□□□□□ -0.4
CCDC47-201ENST00000225726 MED19A0JLT2 244 aaPredicted RBP12.55□□□□□ -0.4
CCDC47-201ENST00000225726 ZNF81P51508 661 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 LIN54Q6MZP7 749 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 CLEC18BQ6UXF7 455 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 C20orf204Q6ZNR8 217 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 ANGPTL6Q8NI99 470 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 PLPPR1Q8TBJ4 325 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 ARID1AO14497 2285 aa12.55□□□□□ -0.4
CCDC47-201ENST00000225726 SPRY3O43610 288 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 SCTP09683 121 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 HERV-K104P61576 105 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 SUPT4H1P63272 117 aaKnown RBP12.54□□□□□ -0.4
CCDC47-201ENST00000225726 HLA-DRB3P79483 266 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 SRSF4Q08170 494 aaKnown RBP12.54□□□□□ -0.4
CCDC47-201ENST00000225726 COMMD7Q86VX2 200 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 PIEZO1Q92508 2521 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 AADACP22760 399 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 OR4A4PQ8NGN8 299 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 RNASE6Q93091 150 aaKnown RBP12.54□□□□□ -0.4
CCDC47-201ENST00000225726 TOMM40LQ969M1 308 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 ZDHHC8Q9ULC8 765 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 DBX1A6NMT0 343 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 IFNL4K9M1U5 179 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 TK1P04183 234 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 RPS2P15880 293 aaKnown RBP12.54□□□□□ -0.4
CCDC47-201ENST00000225726 GATA4P43694 442 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 AKIRIN2Q53H80 203 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 FAM90A1Q86YD7 464 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 COQ8AQ8NI60 647 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 PIK3IP1Q96FE7 263 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 WDR89Q96FK6 387 aaPredicted RBP12.54□□□□□ -0.4
CCDC47-201ENST00000225726 RDH8Q9NYR8 311 aa12.54□□□□□ -0.4
CCDC47-201ENST00000225726 FAM90A27PA6NNH2 459 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 SRRM5B3KS81 715 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 LGALS8O00214 317 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 ZNF205O95201 554 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 CEBPDP49716 269 aaPredicted RBP12.53□□□□□ -0.4
CCDC47-201ENST00000225726 FXYD4P59646 89 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 SEC61A1P61619 476 aaKnown RBP12.53□□□□□ -0.4
CCDC47-201ENST00000225726 POLR2GP62487 172 aaKnown RBP eCLIP12.53□□□□□ -0.4
CCDC47-201ENST00000225726 ADORA2A-AS1P86434 159 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 SLC9A3R2Q15599 337 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 ITLN1Q8WWA0 313 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 DIRAS3O95661 229 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 PPYP01298 95 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 TNFSF4P23510 183 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 NFYAP23511 347 aaPredicted RBP12.53□□□□□ -0.4
CCDC47-201ENST00000225726 HERPUD1Q15011 391 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 TMEM65Q6PI78 240 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 KCTD9Q7L273 389 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 CABLES2Q9BTV7 478 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 ESRP2Q9H6T0 727 aaKnown RBP12.53□□□□□ -0.4
CCDC47-201ENST00000225726 IL19Q9UHD0 177 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 RP1L1Q8IWN7 2480 aaPredicted RBP12.53□□□□□ -0.4
CCDC47-201ENST00000225726 CRYM-AS1A6NIL9 109 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 TOR1AO14656 332 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 ATXN7O15265 892 aaPredicted RBP12.53□□□□□ -0.4
CCDC47-201ENST00000225726 IGHV1-46P01743 117 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 ADIPOQQ15848 244 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 NCMAPQ5T1S8 102 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 MOGAT3Q86VF5 341 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 SGPP2Q8IWX5 399 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 OR5T2Q8NGG2 359 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 RSRP1Q9BUV0 290 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 SLA2Q9H6Q3 261 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 SEBOXQ9HB31 216 aaPredicted RBP12.53□□□□□ -0.4
CCDC47-201ENST00000225726 PCDHB10Q9UN67 800 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 WIPI2Q9Y4P8 454 aa12.53□□□□□ -0.4
CCDC47-201ENST00000225726 BET1O15155 118 aa12.52□□□□□ -0.4
CCDC47-201ENST00000225726 PLA2G5P39877 138 aa12.52□□□□□ -0.4
CCDC47-201ENST00000225726 KCNJ3P48549 501 aa12.52□□□□□ -0.4
CCDC47-201ENST00000225726 ATXN7L3Q14CW9 347 aaPredicted RBP12.52□□□□□ -0.4
CCDC47-201ENST00000225726 ABCA11PQ4W5N1 156 aa12.52□□□□□ -0.4
CCDC47-201ENST00000225726 IGKV1-6A0A0C4DH72 117 aa12.52□□□□□ -0.41
CCDC47-201ENST00000225726 IFNA2P01563 188 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms