RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PRKACAP17612 351 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 ATP6V1B2P21281 511 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 FASP25445 335 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 IL3RAP26951 378 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 CDX1P47902 265 aaPredicted RBP4.98□□□□□ -1.61
CUX1-220ENST00000607092 KCNJ3P48549 501 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 MTCP1P56278 107 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 RAB25P57735 213 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 PPP1R8Q12972 351 aaKnown RBP4.98□□□□□ -1.61
CUX1-220ENST00000607092 FOXE3Q13461 319 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 MED21Q13503 144 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 RBM39Q14498 530 aaKnown RBP4.98□□□□□ -1.61
CUX1-220ENST00000607092 KIR2DS1Q14954 304 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 C21orf62-AS1Q17RA5 79 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 TMEM244Q5VVB8 128 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 NXNL2Q5VZ03 156 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 ETV3LQ6ZN32 361 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 PLEKHG7Q6ZR37 379 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 TGIF2LXQ8IUE1 241 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 SLC35F2Q8IXU6 374 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 SAXO1Q8IYX7 474 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 DRAM1Q8N682 238 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 YIPF7Q8N8F6 280 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 CANT1Q8WVQ1 401 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 RFKQ969G6 155 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 NRBF2Q96F24 287 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 OSBPL10Q9BXB5 764 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 CHST6Q9GZX3 395 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 COMMD4Q9H0A8 199 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 ZMAT4Q9H898 229 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 HMG20AQ9NP66 347 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 TVP23BQ9NYZ1 205 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 ZNF256Q9Y2P7 627 aaPredicted RBP4.98□□□□□ -1.61
CUX1-220ENST00000607092 KBTBD11-OT1A0A1B0GTJ5 212 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 METTL15A6NJ78 407 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 SEC14L6B5MCN3 397 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 LY6LH3BQJ8 138 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 SIRPB1O00241 398 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 TXNL1O43396 289 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 PSPNO60542 156 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 ENTPD6O75354 484 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 SRSF10O75494 262 aaKnown RBP4.97□□□□□ -1.61
CUX1-220ENST00000607092 IGHA1P01876 353 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 MT-ND2P03891 347 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 GAPDHP04406 335 aaKnown RBP4.97□□□□□ -1.61
CUX1-220ENST00000607092 AMY1AP04745 511 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 AMY2AP04746 511 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 MRPL3P09001 348 aaKnown RBP4.97□□□□□ -1.61
CUX1-220ENST00000607092 CCDC159P0C7I6 412 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 OR8U8P0C7N1 319 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 OR2T7P0C7T2 308 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 LYL1P12980 280 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 VDAC1P21796 283 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 CD24P25063 80 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 ATP6V1E1P36543 226 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 GPR12P47775 334 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 OR3A1P47881 315 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 POU3F4P49335 361 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 GTF2A1P52655 376 aaPredicted RBP4.97□□□□□ -1.61
CUX1-220ENST00000607092 CRISP1P54107 249 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 MFGE8Q08431 387 aaPredicted RBP4.97□□□□□ -1.61
CUX1-220ENST00000607092 PDZK1IP1Q13113 114 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 TMED1Q13445 227 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 UBE2V2Q15819 145 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 DMRTC1Q5HYR2 192 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 KRBOX4Q5JUW0 171 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 CASC10Q5T4H9 136 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 PRAMEF5Q5TYX0 476 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 LPCAT4Q643R3 524 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 IZUMO2Q6UXV1 221 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 TCF23Q7RTU1 214 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 KCTD20Q7Z5Y7 419 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 ZNF329Q86UD4 541 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 ZNF429Q86V71 674 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 ADGRG5Q8IZF4 528 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 STPG2Q8N412 459 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 TPRX1Q8N7U7 411 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 C5orf56Q8N8D9 126 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 BBS1Q8NFJ9 593 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 OR52N4Q8NGI2 321 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 OR10X1Q8NGY0 326 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 OR2T10Q8NGZ9 312 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 EME1Q96AY2 570 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 MRPL48Q96GC5 212 aaKnown RBP4.97□□□□□ -1.61
CUX1-220ENST00000607092 OPALINQ96PE5 141 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 APOL4Q9BPW4 351 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 C9orf16Q9BUW7 83 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 GHITMQ9H3K2 345 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 LIN7CQ9NUP9 197 aaKnown RBP4.97□□□□□ -1.61
CUX1-220ENST00000607092 WARS2Q9UGM6 360 aaKnown RBP4.97□□□□□ -1.61
CUX1-220ENST00000607092 ZNF580Q9UK33 172 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 ADAM30Q9UKF2 790 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 COPS3Q9UNS2 423 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 GSTK1Q9Y2Q3 226 aa4.97□□□□□ -1.61
CUX1-220ENST00000607092 DSCAML1Q8TD84 2053 aa4.96□□□□□ -1.61
CUX1-220ENST00000607092 MEX3AA1L020 520 aaKnown RBP4.96□□□□□ -1.62
CUX1-220ENST00000607092 CCDC182A6NF36 153 aa4.96□□□□□ -1.62
CUX1-220ENST00000607092 NCBP2LA6PVI3 153 aaKnown RBP4.96□□□□□ -1.62
CUX1-220ENST00000607092 J3QR06 171 aa4.96□□□□□ -1.62
CUX1-220ENST00000607092 DEGS1O15121 323 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms