RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 FAM58AQ8N1B3 248 aa11.77□□□□□ -0.53
PNKP-202ENST00000593706 DHRSXQ8N5I4 330 aa11.77□□□□□ -0.53
PNKP-202ENST00000593706 SETD9Q8NE22 299 aa11.77□□□□□ -0.53
PNKP-202ENST00000593706 OR52N4Q8NGI2 321 aa11.77□□□□□ -0.53
PNKP-202ENST00000593706 ZNF596Q8TC21 504 aa11.77□□□□□ -0.53
PNKP-202ENST00000593706 RFT1Q96AA3 541 aa11.77□□□□□ -0.53
PNKP-202ENST00000593706 GAL3ST2Q9H3Q3 398 aa11.77□□□□□ -0.53
PNKP-202ENST00000593706 DPM3Q9P2X0 92 aa11.77□□□□□ -0.53
PNKP-202ENST00000593706 CLEC2DQ9UHP7 191 aa11.77□□□□□ -0.53
PNKP-202ENST00000593706 UBE2J1Q9Y385 318 aaPredicted RBP11.77□□□□□ -0.53
PNKP-202ENST00000593706 HSPE1-MOB4S4R3N1 261 aa11.77□□□□□ -0.53
PNKP-202ENST00000593706 TRGV10A0A0A0MS01 117 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 IRGMA1A4Y4 181 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 SIRPB1O00241 398 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 MGST3O14880 152 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 OGG1O15527 345 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 CAPGP40121 348 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 OR3A1P47881 315 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 P2RX3P56373 397 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 GABPB1Q06547 395 aaPredicted RBP11.76□□□□□ -0.53
PNKP-202ENST00000593706 DOC2BQ14184 412 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 RPL22L1Q6P5R6 122 aaKnown RBP11.76□□□□□ -0.53
PNKP-202ENST00000593706 SERPINA12Q8IW75 414 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 ABHD12Q8N2K0 398 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 OR51A2Q8NGJ7 313 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 OR5D18Q8NGL1 313 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 OR52N1Q8NH53 320 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 COMMD4Q9H0A8 199 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 RHOFQ9HBH0 211 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 DHDHQ9UQ10 334 aa11.76□□□□□ -0.53
PNKP-202ENST00000593706 WI2-2373I1.2A0A1W2PRP0 233 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 LEUTXA8MZ59 168 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 MMP23AO75900 390 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 OR2F2O95006 317 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 CALCBP10092 127 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 CDK2P24941 298 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 HOXD3P31249 432 aaPredicted RBP11.75□□□□□ -0.53
PNKP-202ENST00000593706 CEACAM3P40198 252 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 CD69Q07108 199 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 KISS1Q15726 138 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 BAIAP2L2Q6UXY1 529 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 RTN4RL2Q86UN3 420 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 OR5D14Q8NGL3 314 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 GGHQ92820 318 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 SMIM19Q96E16 107 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 RBM14Q96PK6 669 aaKnown RBP11.75□□□□□ -0.53
PNKP-202ENST00000593706 GPR61Q9BZJ8 451 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 BABAM2Q9NXR7 383 aa11.75□□□□□ -0.53
PNKP-202ENST00000593706 NKX1-2Q9UD57 310 aaPredicted RBP11.75□□□□□ -0.53
PNKP-202ENST00000593706 EXOSC1Q9Y3B2 195 aaKnown RBP11.75□□□□□ -0.53
PNKP-202ENST00000593706 FUOMA2VDF0 154 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 SH2D7A6NKC9 451 aaPredicted RBP11.74□□□□□ -0.53
PNKP-202ENST00000593706 OR2H2O95918 312 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 OCM2P0CE71 109 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 OCMP0CE72 109 aaPredicted RBP11.74□□□□□ -0.53
PNKP-202ENST00000593706 LMO1P25800 156 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 ERP29P30040 261 aaKnown RBP11.74□□□□□ -0.53
PNKP-202ENST00000593706 KRTAP10-11P60412 298 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 RPS11P62280 158 aaKnown RBP eCLIP11.74□□□□□ -0.53
PNKP-202ENST00000593706 BDH1Q02338 343 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 RBM39Q14498 530 aaKnown RBP11.74□□□□□ -0.53
PNKP-202ENST00000593706 DMKNQ6E0U4 476 aaPredicted RBP11.74□□□□□ -0.53
PNKP-202ENST00000593706 Q6P435 159 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 C10orf99Q6UWK7 81 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 HEPN1Q6WQI6 88 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 TMPRSS11AQ6ZMR5 421 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 GPR148Q8TDV2 347 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 TSEN15Q8WW01 171 aaKnown RBP11.74□□□□□ -0.53
PNKP-202ENST00000593706 TFAP2CQ92754 450 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 CREB3L1Q96BA8 519 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 TMEM80Q96HE8 168 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 PGLYRP3Q96LB9 341 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 EXOSC4Q9NPD3 245 aaKnown RBP11.74□□□□□ -0.53
PNKP-202ENST00000593706 PLCXD1Q9NUJ7 323 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 FKBP14Q9NWM8 211 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 TAS2R4Q9NYW5 299 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 CNOT2Q9NZN8 540 aaKnown RBP11.74□□□□□ -0.53
PNKP-202ENST00000593706 PSORS1C1Q9UIG5 152 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 GSTK1Q9Y2Q3 226 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 PCDHGB5Q9Y5G0 923 aa11.74□□□□□ -0.53
PNKP-202ENST00000593706 TRBV5-5A0A0J9YX44 114 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 M0QZK8 103 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 GABRPO00591 440 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 TOR1AO14656 332 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 MYL12AP19105 171 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 MNDAP41218 407 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 PTGFRP43088 359 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 SOX2P48431 317 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 ST3GAL4Q11206 333 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 ELP2Q6IA86 826 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 ASCL4Q6XD76 172 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 C8orf59Q8N0T1 100 aaPredicted RBP11.73□□□□□ -0.53
PNKP-202ENST00000593706 Q8NFD4 153 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 PXT1Q8NFP0 134 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 OR51D1Q8NGF3 324 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 NRG4Q8WWG1 115 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 TMEM106AQ96A25 262 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 DCLRE1BQ9H816 532 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 ZNF286AQ9HBT8 521 aa11.73□□□□□ -0.53
PNKP-202ENST00000593706 PSMB11A5LHX3 300 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms