RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 CALRP27797 417 aaKnown RBP9.72□□□□□ -0.85
LIG3-213ENST00000590630 PSMB9P28065 219 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 SAA4P35542 130 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 GLIPR1P48060 266 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 UBA52P62987 128 aaKnown RBP9.72□□□□□ -0.85
LIG3-213ENST00000590630 PRB3Q04118 309 aaPredicted RBP9.72□□□□□ -0.85
LIG3-213ENST00000590630 C1orf100Q5SVJ3 147 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 HCP5Q6MZN7 132 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 Q6YL49 198 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 CORO2AQ92828 525 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 SLC25A28Q96A46 364 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 COQ2Q96H96 371 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 DPCDQ9BVM2 203 aaPredicted RBP9.72□□□□□ -0.85
LIG3-213ENST00000590630 BARHL1Q9BZE3 327 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 CST11Q9H112 138 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 NCOR1P1Q9H4R4 102 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 TAS2R3Q9NYW6 316 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 OR6C3Q9NZP0 311 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 FAM96BQ9Y3D0 163 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 MEX3AA1L020 520 aaKnown RBP9.71□□□□□ -0.86
LIG3-213ENST00000590630 MEIOCA2RUB1 952 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A10PA6NDY2 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A18PA6NE21 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A16PA6NEW6 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A20PA6NIJ5 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A8PA6NJQ4 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A7PA6NKC0 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A22PA8MWA6 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A12PA8MX19 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A5PA8MXJ8 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A23PA8MXZ1 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 H3BUI4 141 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 SLC22A1O15245 554 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 CRTAPO75718 401 aaPredicted RBP9.71□□□□□ -0.86
LIG3-213ENST00000590630 CLPXO76031 633 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 RNASE1P07998 156 aaKnown RBP9.71□□□□□ -0.86
LIG3-213ENST00000590630 FBP1P09467 338 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A15PP0C7V4 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A13PP0C7W8 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A14PP0C7W9 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 FAM90A24PP0C7X0 464 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 MGMTP16455 207 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 HTR2CP28335 458 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 RANBP1P43487 201 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 PSMD7P51665 324 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 SLC9A3R2Q15599 337 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 TAF9Q16594 264 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 ZNF782Q6ZMW2 699 aaPredicted RBP9.71□□□□□ -0.86
LIG3-213ENST00000590630 LDLRAD3Q86YD5 345 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 TMEM86BQ8N661 226 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 ZNF565Q8N9K5 539 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 SUMF2Q8NBJ7 301 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 OR6M1Q8NGM8 313 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 OR13D1Q8NGV5 346 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 SPATA3Q8NHX4 192 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 SSMEM1Q8WWF3 244 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 SELENOIQ9C0D9 397 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 POMT1Q9Y6A1 747 aa9.71□□□□□ -0.86
LIG3-213ENST00000590630 TRDV1A0A1B0GX56 115 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 A0A1W2PRD5 423 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 A0A1W2PRF3 423 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 A0A1W2PRM7 423 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 HOXA3O43365 443 aaPredicted RBP9.7□□□□□ -0.86
LIG3-213ENST00000590630 TNFAIP8O95379 198 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 PAHP00439 452 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 MELTFP08582 738 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 ATAD3CQ5T2N8 411 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 RSBN1Q5VWQ0 802 aaPredicted RBP9.7□□□□□ -0.86
LIG3-213ENST00000590630 HEPN1Q6WQI6 88 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 PNKDQ8N490 385 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.7□□□□□ -0.86
LIG3-213ENST00000590630 TMEM104Q8NE00 496 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 KCNG3Q8TAE7 436 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 Q96M66 194 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 DUX5Q96PT3 197 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 BANF2Q9H503 90 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 PLGRKTQ9HBL7 147 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 ING3Q9NXR8 418 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 ZNF581Q9P0T4 197 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 RCC2Q9P258 522 aaKnown RBP9.7□□□□□ -0.86
LIG3-213ENST00000590630 KIF25Q9UIL4 384 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 SESN1Q9Y6P5 492 aa9.7□□□□□ -0.86
LIG3-213ENST00000590630 MEIKINA0A087WXM9 373 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 TRAV1-2A0A0B4J238 106 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 ZNF729A6NN14 1252 aaPredicted RBP9.69□□□□□ -0.86
LIG3-213ENST00000590630 MCRIP1C9JLW8 97 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 SLC17A2O00624 439 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 BPNT1O95861 308 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 VSIG8P0DPA2 414 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 COX7A1P24310 79 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 MYL9P24844 172 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 FGF9P31371 208 aaPredicted RBP9.69□□□□□ -0.86
LIG3-213ENST00000590630 GLP1RP43220 463 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 IER3P46695 156 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 LGALS4P56470 323 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 ACTG1P63261 375 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 RBM39Q14498 530 aaKnown RBP9.69□□□□□ -0.86
LIG3-213ENST00000590630 SYT6Q5T7P8 510 aaPredicted RBP9.69□□□□□ -0.86
LIG3-213ENST00000590630 SLC35E4Q6ICL7 350 aa9.69□□□□□ -0.86
LIG3-213ENST00000590630 OR52W1Q6IF63 320 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms