RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	TFG	Q92734	400 aa	Predicted RBP	3.81	□□□□□ -1.8
SS18-223	ENST00000583595	ARL11	Q969Q4	196 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	ISOC2	Q96AB3	205 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	APH1A	Q96BI3	265 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	ITCH	Q96J02	903 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	ZNF514	Q96K75	400 aa	Predicted RBP	3.81	□□□□□ -1.8
SS18-223	ENST00000583595	ATF6B	Q99941	703 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	RARRES2	Q99969	163 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	DDA1	Q9BW61	102 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	PARD6G	Q9BYG4	376 aa	Predicted RBP	3.81	□□□□□ -1.8
SS18-223	ENST00000583595	ZBP1	Q9H171	429 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	IL26	Q9NPH9	171 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	CLN6	Q9NWW5	311 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	ZNF226	Q9NYT6	803 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	COMMD3	Q9UBI1	195 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	LSM2	Q9Y333	95 aa	Known RBP	3.81	□□□□□ -1.8
SS18-223	ENST00000583595	PUS1	Q9Y606	427 aa	Known RBP eCLIP	3.81	□□□□□ -1.8
SS18-223	ENST00000583595	ZNF831	Q5JPB2	1677 aa		3.81	□□□□□ -1.8
SS18-223	ENST00000583595	TRAV9-2	A0A087WT02	112 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	NAP1L6	A6NFF2	107 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595		A6NIZ1	184 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595		A8MT66	165 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	CDX4	O14627	284 aa	Predicted RBP	3.8	□□□□□ -1.8
SS18-223	ENST00000583595	AZIN1	O14977	448 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	SCAMP2	O15127	329 aa	Known RBP	3.8	□□□□□ -1.8
SS18-223	ENST00000583595	FGF16	O43320	207 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	EMC8	O43402	210 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	SOX15	O60248	233 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	CLDN11	O75508	207 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	GJB5	O95377	273 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	SLC25A27	O95847	323 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	IFNA6	P05013	189 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	FGF1	P05230	155 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	C8G	P07360	202 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	SLC35E2B	P0CK96	405 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	MT3	P25713	68 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	GABRR2	P28476	465 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	AGTR1	P30556	359 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	KIR2DS2	P43631	304 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	ZNF140	P52738	457 aa	Predicted RBP	3.8	□□□□□ -1.8
SS18-223	ENST00000583595	CEBPG	P53567	150 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	CRISP3	P54108	245 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	AP3S2	P59780	193 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	RAB8A	P61006	207 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	ACTA2	P62736	377 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	ACTG2	P63267	376 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	ACTC1	P68032	377 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	ACTA1	P68133	377 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	PITPNA	Q00169	270 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	REEP5	Q00765	189 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	PAX2	Q02962	417 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	MXD1	Q05195	221 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	ARL6IP1	Q15041	203 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	GABRA6	Q16445	453 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	ATP6AP1L	Q52LC2	224 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	MEST	Q5EB52	335 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	NCMAP	Q5T1S8	102 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	AKR1C8P	Q5T2L2	129 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	EIF5AL1	Q6IS14	154 aa	Known RBP	3.8	□□□□□ -1.8
SS18-223	ENST00000583595	TOMM5	Q8N4H5	51 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	OR10D4P	Q8NGN7	298 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	OR1J4	Q8NGS1	313 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	OR13D1	Q8NGV5	346 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	TWIST2	Q8WVJ9	160 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	ITLN1	Q8WWA0	313 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	DNASE2B	Q8WZ79	361 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	FBXO17	Q96EF6	278 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	SMARCD1	Q96GM5	515 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	OR5B12	Q96R08	314 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	OR4K3	Q96R72	315 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	RIOK2	Q9BVS4	552 aa	Known RBP	3.8	□□□□□ -1.8
SS18-223	ENST00000583595	SNHG12	Q9BXW3	62 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	POTEKP	Q9BYX7	375 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	TLNRD1	Q9H1K6	362 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	PRO1933	Q9H354	126 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	REEP1	Q9H902	201 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	MMP26	Q9NRE1	261 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	HEBP1	Q9NRV9	189 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	3.8	□□□□□ -1.8
SS18-223	ENST00000583595	UQCC1	Q9NVA1	299 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	HRASLS2	Q9NWW9	162 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	MS4A12	Q9NXJ0	267 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	CTSZ	Q9UBR2	303 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	CLEC2D	Q9UHP7	191 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	GNG8	Q9UK08	70 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	ZNF225	Q9UK10	706 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	RCL1	Q9Y2P8	373 aa	Known RBP	3.8	□□□□□ -1.8
SS18-223	ENST00000583595	YARS2	Q9Y2Z4	477 aa	Known RBP	3.8	□□□□□ -1.8
SS18-223	ENST00000583595	UBR2	Q8IWV8	1755 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	COL5A3	P25940	1745 aa	Predicted RBP	3.8	□□□□□ -1.8
SS18-223	ENST00000583595	KIAA1551	Q9HCM1	1747 aa		3.8	□□□□□ -1.8
SS18-223	ENST00000583595	TDRD15	B5MCY1	1934 aa	Known RBP	3.8	□□□□□ -1.8
SS18-223	ENST00000583595	CEP350	Q5VT06	3117 aa		3.79	□□□□□ -1.8
SS18-223	ENST00000583595	TNRC6C	Q9HCJ0	1690 aa	Known RBP	3.79	□□□□□ -1.8
SS18-223	ENST00000583595		A0A087WUJ7	227 aa		3.79	□□□□□ -1.8
SS18-223	ENST00000583595	TRDV1	A0A1B0GX56	115 aa		3.79	□□□□□ -1.8
SS18-223	ENST00000583595	KANTR	A0A1W2PQU2	76 aa		3.79	□□□□□ -1.8
SS18-223	ENST00000583595	SLC5A10	A0PJK1	596 aa		3.79	□□□□□ -1.8
SS18-223	ENST00000583595	IRGM	A1A4Y4	181 aa		3.79	□□□□□ -1.8
SS18-223	ENST00000583595	EEF1E1	O43324	174 aa	Known RBP	3.79	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms