RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 CSMD3Q7Z407 3707 aa9.91□□□□□ -0.82
SS18-219ENST00000581570 IGHV3-72A0A0B4J1Y9 119 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 OVOL1O14753 267 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 RPP14O95059 124 aaKnown RBP9.9□□□□□ -0.82
SS18-219ENST00000581570 CGB3P0DN86 165 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 CGB7P0DN87 165 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 PSMB8P28062 276 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 GNG10P50151 68 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 PDZK1IP1Q13113 114 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 ATXN7L3Q14CW9 347 aaPredicted RBP9.9□□□□□ -0.82
SS18-219ENST00000581570 LTC4SQ16873 150 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 FAM98BQ52LJ0 330 aaKnown RBP9.9□□□□□ -0.82
SS18-219ENST00000581570 SLC35F2Q8IXU6 374 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 ZNF565Q8N9K5 539 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 CCDC54Q8NEL0 328 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 OR10X1Q8NGY0 326 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 OR2T10Q8NGZ9 312 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 DCUN1D4Q92564 292 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 RASL11BQ9BPW5 248 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 COMMD4Q9H0A8 199 aa9.9□□□□□ -0.82
SS18-219ENST00000581570 PPIL3Q9H2H8 161 aaKnown RBP9.9□□□□□ -0.82
SS18-219ENST00000581570 IGHV1-3A0A0C4DH29 117 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 ZNF670-ZNF695F2Z2N8 137 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 I3L521 148 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 SLC33A1O00400 549 aaPredicted RBP9.89□□□□□ -0.83
SS18-219ENST00000581570 HSD17B6O14756 317 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 SASH3O75995 380 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 GAPDHP04406 335 aaKnown RBP9.89□□□□□ -0.83
SS18-219ENST00000581570 GLP1RP43220 463 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 GABPB1Q06547 395 aaPredicted RBP9.89□□□□□ -0.83
SS18-219ENST00000581570 ZNF816Q0VGE8 651 aaPredicted RBP9.89□□□□□ -0.83
SS18-219ENST00000581570 SRSF7Q16629 238 aaKnown RBP eCLIP9.89□□□□□ -0.83
SS18-219ENST00000581570 SPATS1Q496A3 300 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 Q6P435 159 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 CATSPERDQ86XM0 798 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 DEFB107AQ8IZN7 70 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 Q8N6K4 173 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 YIPF7Q8N8F6 280 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 CHST4Q8NCG5 386 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 OR6Q1Q8NGQ2 317 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 PP6455Q8WZ26 134 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 C10orf35Q96D05 121 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 UBE2E2Q96LR5 201 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 KCTD7Q96MP8 289 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 OR5B12Q96R08 314 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 MNTQ99583 582 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 ZNF556Q9HAH1 456 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 GNB4Q9HAV0 340 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 SLC25A19Q9HC21 320 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 CALYQ9NYX4 217 aa9.89□□□□□ -0.83
SS18-219ENST00000581570 KIAA2026Q5HYC2 2103 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 IGKV1-9A0A0C4DH69 117 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 IGKV1-12A0A0C4DH73 117 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 A0A1W2PPE3 182 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 DEGS1O15121 323 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 CST1P01037 141 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 IL1AP01583 271 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 IGKV1D-12P01611 117 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 OR5H8P0DN80 308 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 IGHV4-30-4P0DP06 118 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 ATF1P18846 271 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 PRKACBP22694 351 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 C21orf33P30042 268 aaPredicted RBP9.88□□□□□ -0.83
SS18-219ENST00000581570 REG1BP48304 166 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 GNB1P62873 340 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 RUNX1Q01196 453 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 KIAA0141Q14154 515 aaPredicted RBP9.88□□□□□ -0.83
SS18-219ENST00000581570 FAM53AQ6NSI3 398 aaPredicted RBP9.88□□□□□ -0.83
SS18-219ENST00000581570 TMEM65Q6PI78 240 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 SLC16A12Q6ZSM3 486 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 LHFPL2Q6ZUX7 228 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 TMEM179BQ7Z7N9 219 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 IZUMO1Q8IYV9 350 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 ZNF491Q8N8L2 437 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 OR13A1Q8NGR1 328 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 RFESDQ8TAC1 157 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 MYOZ3Q8TDC0 251 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 RFT1Q96AA3 541 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 S1PR3Q99500 378 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 HSPB9Q9BQS6 159 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 OSBPL10Q9BXB5 764 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 PLSCR3Q9NRY6 295 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 VSIG4Q9Y279 399 aa9.88□□□□□ -0.83
SS18-219ENST00000581570 MEIKINA0A087WXM9 373 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 KDM4BO94953 1096 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 IGF1P05019 195 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 KRT8P05787 483 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 MYF6P23409 242 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 HTR1FP30939 366 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 SOX6P35712 828 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 BCDIN3DQ7Z5W3 292 aaKnown RBP9.87□□□□□ -0.83
SS18-219ENST00000581570 DHFR2Q86XF0 187 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 FAM71E2Q8N5Q1 922 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 OR51T1Q8NGJ9 327 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 DLX4Q92988 240 aaPredicted RBP9.87□□□□□ -0.83
SS18-219ENST00000581570 ADAT3Q96EY9 351 aaPredicted RBP9.87□□□□□ -0.83
SS18-219ENST00000581570 ELAC2Q9BQ52 826 aaKnown RBP9.87□□□□□ -0.83
SS18-219ENST00000581570 KLK15Q9H2R5 256 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 GHITMQ9H3K2 345 aa9.87□□□□□ -0.83
SS18-219ENST00000581570 LINC00574Q9H8X3 128 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms