RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	FAM71E2	Q8N5Q1	922 aa		12.51	□□□□□ -0.41
CLK3-223	ENST00000568488	ASB17	Q8WXJ9	295 aa		12.51	□□□□□ -0.41
CLK3-223	ENST00000568488	EME1	Q96AY2	570 aa		12.51	□□□□□ -0.41
CLK3-223	ENST00000568488	COQ2	Q96H96	371 aa		12.51	□□□□□ -0.41
CLK3-223	ENST00000568488	S1PR3	Q99500	378 aa		12.51	□□□□□ -0.41
CLK3-223	ENST00000568488	ALX4	Q9H161	411 aa	Predicted RBP	12.51	□□□□□ -0.41
CLK3-223	ENST00000568488	PPIL3	Q9H2H8	161 aa	Known RBP	12.51	□□□□□ -0.41
CLK3-223	ENST00000568488	HMG20A	Q9NP66	347 aa		12.51	□□□□□ -0.41
CLK3-223	ENST00000568488	IDI2-AS1	Q9NZ38	188 aa		12.51	□□□□□ -0.41
CLK3-223	ENST00000568488	OR6C3	Q9NZP0	311 aa		12.51	□□□□□ -0.41
CLK3-223	ENST00000568488	WSB1	Q9Y6I7	421 aa		12.51	□□□□□ -0.41
CLK3-223	ENST00000568488		R4GMQ9	66 aa		12.51	□□□□□ -0.41
CLK3-223	ENST00000568488	IGHV1-3	A0A0C4DH29	117 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488		A8MZ25	164 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	HSD17B6	O14756	317 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	ARPC2	O15144	300 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	SRSF10	O75494	262 aa	Known RBP	12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	SERPINA3	P01011	423 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	GAPDH	P04406	335 aa	Known RBP	12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	OR5H8	P0DN80	308 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	SOX6	P35712	828 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	GLP1R	P43220	463 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	ATP1B3	P54709	279 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	ACSM6	Q6P461	480 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	MYOZ3	Q8TDC0	251 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	PLSCR3	Q9NRY6	295 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	KRT84	Q9NSB2	600 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	CHCHD3	Q9NX63	227 aa	Known RBP	12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	CALY	Q9NYX4	217 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	SAMHD1	Q9Y3Z3	626 aa	Known RBP	12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	SNX5	Q9Y5X3	404 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	TMEM14A	Q9Y6G1	99 aa		12.5	□□□□□ -0.41
CLK3-223	ENST00000568488	SYT7	O43581	403 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	HMGN1	P05114	100 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	MTNR1B	P49286	362 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	RBP2	P50120	134 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488		Q8N6K4	173 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	ZNF565	Q8N9K5	539 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	OR10G2	Q8NGC3	310 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	RFESD	Q8TAC1	157 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	LINC00476	Q8WZB0	136 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	OR51J1	Q9H342	316 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	REEP1	Q9H902	201 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	RETN	Q9HD89	108 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	ACTR3B	Q9P1U1	418 aa		12.49	□□□□□ -0.41
CLK3-223	ENST00000568488	LINC01619	G3V211	115 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	CCDC22	O60826	627 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	IGF1	P05019	195 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	OR8U9	P0C7N5	309 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	SLC2A5	P22732	501 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	MTCP1	P56278	107 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	ACTR3	P61158	418 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	PITPNA	Q00169	270 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	ZNF816	Q0VGE8	651 aa	Predicted RBP	12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	ZNF322	Q6U7Q0	402 aa	Predicted RBP	12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	CD300LD	Q6UXZ3	194 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488		Q6ZSR3	168 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	SATL1	Q86VE3	508 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	IZUMO1	Q8IYV9	350 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	FAM110A	Q9BQ89	295 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	ADI1	Q9BV57	179 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	TUBA4B	Q9H853	241 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	KIAA1456	Q9P272	454 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	HECTD4	Q9Y4D8	3996 aa		12.48	□□□□□ -0.41
CLK3-223	ENST00000568488	MEIKIN	A0A087WXM9	373 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488		G3V318	75 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	DEGS1	O15121	323 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	RPP14	O95059	124 aa	Known RBP	12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	MOS	P00540	346 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	CSN2	P05814	226 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	CGB3	P0DN86	165 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	CGB7	P0DN87	165 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	C21orf33	P30042	268 aa	Predicted RBP	12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	MAGEA2	P43356	314 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	RAB9A	P51151	201 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	CXCR4	P61073	352 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	OR13A1	Q8NGR1	328 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	RFT1	Q96AA3	541 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	FEV	Q99581	238 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	RSRP1	Q9BUV0	290 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	TMED9	Q9BVK6	235 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	OSBPL10	Q9BXB5	764 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	CHST5	Q9GZS9	411 aa		12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	ZNF107	Q9UII5	783 aa	Predicted RBP	12.47	□□□□□ -0.41
CLK3-223	ENST00000568488	SLC33A1	O00400	549 aa	Predicted RBP	12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	HSPB6	O14558	160 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	HSPA12A	O43301	675 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	IL1A	P01583	271 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	HSD17B1	P14061	328 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	CCL1	P22362	96 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	CNTFR	P26992	372 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	PPIF	P30405	207 aa	Known RBP	12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	HTR1F	P30939	366 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	F2RL1	P55085	397 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	CYP2R1	Q6VVX0	501 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	ANKRD13B	Q86YJ7	626 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	CMTM5	Q96DZ9	223 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	COMMD4	Q9H0A8	199 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	KIF25	Q9UIL4	384 aa		12.46	□□□□□ -0.41
CLK3-223	ENST00000568488	KIAA1109	Q2LD37	5005 aa		12.45	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms