RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CLVS2Q5SYC1 327 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 WDR82Q6UXN9 313 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 FAM19A1Q7Z5A9 133 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 MRPL52Q86TS9 123 aaKnown RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 PDPNQ86YL7 162 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 RAB43Q86YS6 212 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 CYP4Z2PQ8N1L4 340 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 C2orf73Q8N5S3 287 aaPredicted RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 WDR31Q8NA23 367 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 UBAC2Q8NBM4 344 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 OR4K2Q8NGD2 314 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 OR5D18Q8NGL1 313 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 OR5AK3PQ8NH89 298 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 ZNF420Q8TAQ5 688 aaPredicted RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 RNASEH2CQ8TDP1 164 aaKnown RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 RNF133Q8WVZ7 376 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 IFT81Q8WYA0 676 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 OR5P2Q8WZ92 322 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 RORBQ92753 470 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 RCN3Q96D15 328 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 OTUB2Q96DC9 234 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 ADTRPQ96IZ2 230 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 FAM19A4Q96LR4 140 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 MBOAT7Q96N66 472 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 OR2V2Q96R30 315 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 GPR21Q99679 349 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 PDCD1LG2Q9BQ51 273 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 SELENOSQ9BQE4 189 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 CALN1Q9BXU9 219 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 TOLLIPQ9H0E2 274 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 PORCNQ9H237 461 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 OR51V1Q9H2C8 321 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 C6orf50Q9HD87 102 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 ASCL3Q9NQ33 180 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 IFT46Q9NQC8 304 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 FKBP14Q9NWM8 211 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 SDHAF2Q9NX18 166 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 TAS2R9Q9NYW1 312 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 SNX24Q9Y343 169 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 ZNF337Q9Y3M9 751 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 TBL2Q9Y4P3 447 aaKnown RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 POLR3HQ9Y535 204 aaPredicted RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 ELP1O95163 1332 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 MIA3Q5JRA6 1907 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 IGKV1OR2-108A0A075B7D4 117 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 A0A0B4J2E0 115 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 A0A1B0GX12 115 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 A0A1W2PQL4 384 aaPredicted RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 C9J4A7 227 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 FTCDNL1E5RQL4 147 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 H0Y980 276 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 C15orf65H3BRN8 121 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 J3QLI3 93 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 M0QZ92 97 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 DFFAO00273 331 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 SLC16A4O15374 487 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 SLC31A1O15431 190 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 FGF16O43320 207 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ATP8B1O43520 1251 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 CYTH3O43739 400 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 MPZL2O60487 215 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 CTNSO60931 367 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 LYPLA2O95372 231 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 CPSF4O95639 269 aaKnown RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 RAB36O95755 333 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 IFNA5P01569 189 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 IGHV1-46P01743 117 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 IGHG2P01859 326 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 IGHMP01871 453 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 HLA-AP01891 365 aaKnown RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 RPS17P08708 135 aaKnown RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 OR5AC1P0C628 307 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 THRAP10827 490 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 GFAPP14136 432 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 RAB5AP20339 215 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 PRPS1L1P21108 318 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 HSD11B1P28845 292 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 GNRHRP30968 328 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 APLNRP35414 380 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 NKX2-5P52952 324 aaPredicted RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 HCCSP53701 268 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 AP1S2P56377 157 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 OR10A3P58181 314 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 AP3S2P59780 193 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 RAB14P61106 215 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ERVS71-1P61550 626 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 POLR2GP62487 172 aaKnown RBP eCLIP0.87□□□□□ -2.27
VPS35-207ENST00000568191 MGAT3Q09327 533 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ST3GAL4Q11206 333 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 TSPAN31Q12999 210 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 DYNC1I2Q13409 638 aaKnown RBP0.87□□□□□ -2.27
VPS35-207ENST00000568191 NAB1Q13506 487 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 RAB31Q13636 194 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 TFDP2Q14188 446 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 GUSBP1Q15486 140 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 OR1Q1Q15612 314 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 TMEM249Q2WGJ8 235 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 BSXQ3C1V8 233 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 ACTBL2Q562R1 376 aa0.87□□□□□ -2.27
VPS35-207ENST00000568191 TTMPQ5BVD1 217 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms