RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 HES1Q14469 280 aa13.85□□□□□ -0.19
CLK3-221ENST00000568139 ATXN7L3Q14CW9 347 aaPredicted RBP13.85□□□□□ -0.19
CLK3-221ENST00000568139 TP53I3Q53FA7 332 aa13.85□□□□□ -0.19
CLK3-221ENST00000568139 KDM4DQ6B0I6 523 aa13.85□□□□□ -0.19
CLK3-221ENST00000568139 SLC35E3Q7Z769 313 aa13.85□□□□□ -0.19
CLK3-221ENST00000568139 OR8H3Q8N146 312 aa13.85□□□□□ -0.19
CLK3-221ENST00000568139 OR2G2Q8NGZ5 317 aa13.85□□□□□ -0.19
CLK3-221ENST00000568139 NCOR1P1Q9H4R4 102 aa13.85□□□□□ -0.19
CLK3-221ENST00000568139 LINC00574Q9H8X3 128 aa13.85□□□□□ -0.19
CLK3-221ENST00000568139 GNG8Q9UK08 70 aa13.85□□□□□ -0.19
CLK3-221ENST00000568139 DEGS1O15121 323 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 ZNF20P17024 532 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 RAB7AP51149 207 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 MADCAM1Q13477 382 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 HNF4GQ14541 408 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 CDK5R1Q15078 307 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 TEX38Q6PEX7 206 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 FAM220AQ7Z4H9 259 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 FOXRED2Q8IWF2 684 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 ZNF565Q8N9K5 539 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 OR51T1Q8NGJ9 327 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 OR5D18Q8NGL1 313 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 HRASLS5Q96KN8 279 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 SPACA5Q96QH8 159 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 DCLRE1BQ9H816 532 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 CALYQ9NYX4 217 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 IDI2-AS1Q9NZ38 188 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 FRRS1LQ9P0K9 344 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 PSG11Q9UQ72 335 aa13.84□□□□□ -0.19
CLK3-221ENST00000568139 LINC01548A6NM66 108 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 IGKV1D-33P01593 117 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 IGKV1-33P01594 117 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 IGHV3-7P01780 117 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 ATP6V1E1P36543 226 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 LUMP51884 338 aaPredicted RBP13.83□□□□□ -0.2
CLK3-221ENST00000568139 BNIP1Q12981 228 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 TMED1Q13445 227 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 EBI3Q14213 229 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 C9orf66Q5T8R8 295 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 FDX2Q6P4F2 183 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 OR13A1Q8NGR1 328 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 HAVCR2Q8TDQ0 301 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 LEAP2Q969E1 77 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 PRR25Q96S07 402 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 OSBPL10Q9BXB5 764 aa13.83□□□□□ -0.2
CLK3-221ENST00000568139 STAB2Q8WWQ8 2551 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 NPIPB11E5RHQ5 1161 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 RPLP1P05386 114 aaKnown RBP13.82□□□□□ -0.2
CLK3-221ENST00000568139 OCM2P0CE71 109 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 OCMP0CE72 109 aaPredicted RBP13.82□□□□□ -0.2
CLK3-221ENST00000568139 C21orf33P30042 268 aaPredicted RBP13.82□□□□□ -0.2
CLK3-221ENST00000568139 GLP1RP43220 463 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 RAB25P57735 213 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 KIR2DS1Q14954 304 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 PNLIPRP3Q17RR3 467 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 SLC16A12Q6ZSM3 486 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 OR5M8Q8NGP6 311 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 OR8U1Q8NH10 309 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 NEK6Q9HC98 313 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 SCOCQ9UIL1 159 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 KIF25Q9UIL4 384 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 POMPQ9Y244 141 aa13.82□□□□□ -0.2
CLK3-221ENST00000568139 MEIKINA0A087WXM9 373 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 G3V2T6 193 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 AP4M1O00189 453 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 IL1AP01583 271 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 CDX1P47902 265 aaPredicted RBP13.81□□□□□ -0.2
CLK3-221ENST00000568139 NANOS3P60323 173 aaKnown RBP13.81□□□□□ -0.2
CLK3-221ENST00000568139 KLHL22Q53GT1 634 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 KCTD20Q7Z5Y7 419 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 RNF152Q8N8N0 203 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 CCDC197Q8NCU1 140 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 OR51A4Q8NGJ6 313 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 OR13C9Q8NGT0 318 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 OR10AC1Q8NH08 325 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 EME1Q96AY2 570 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 ASCL2Q99929 193 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 GABARAPL1Q9H0R8 117 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 ABCG5Q9H222 651 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 ENOPH1Q9UHY7 261 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 MYRFQ9Y2G1 1151 aa13.81□□□□□ -0.2
CLK3-221ENST00000568139 TRAV24A0A0B4J272 114 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 H0YJX3 145 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 DBTP11182 482 aaKnown RBP13.8□□□□□ -0.2
CLK3-221ENST00000568139 CHATP28329 748 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 POLR2IP36954 125 aaKnown RBP13.8□□□□□ -0.2
CLK3-221ENST00000568139 ECI1P42126 302 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 GPR12P47775 334 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 MTNR1BP49286 362 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 CCR9P51686 369 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 ZP1P60852 638 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 PAX5Q02548 391 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 ZNF816Q0VGE8 651 aaPredicted RBP13.8□□□□□ -0.2
CLK3-221ENST00000568139 DEFB136Q30KP8 78 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 LCNL1Q6ZST4 164 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 TGIF2LXQ8IUE1 241 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 OR10A7Q8NGE5 316 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 OR8J1Q8NGP2 316 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 OR13C3Q8NGS6 347 aa13.8□□□□□ -0.2
CLK3-221ENST00000568139 EAF1Q96JC9 268 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms