RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, human

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-205	ENST00000548650	TOR1A	O14656	332 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	MPZL2	O60487	215 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	LPL	P06858	475 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	CCDC159	P0C7I6	412 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	CGB3	P0DN86	165 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	CGB7	P0DN87	165 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	OR3A4P	P47883	348 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	MRPL28	Q13084	256 aa	Known RBP	13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	RBM39	Q14498	530 aa	Known RBP	13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	ZSCAN26	Q16670	478 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	PXT1	Q8NFP0	134 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	OR52I1	Q8NGK6	324 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	OR13A1	Q8NGR1	328 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	APH1B	Q8WW43	257 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	CAPSL	Q8WWF8	208 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	CALY	Q9NYX4	217 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	KIF25	Q9UIL4	384 aa		13.86	□□□□□ -0.19
CHMP1A-205	ENST00000548650	OOSP1	A8MZH6	123 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	RPSA	P08865	295 aa	Known RBP	13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	PAX5	Q02548	391 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	IL13RA2	Q14627	380 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	PAN3	Q58A45	887 aa	Known RBP	13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	CCDC144NL	Q6NUI1	221 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	C10orf99	Q6UWK7	81 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	WFDC9	Q8NEX5	89 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	OR9G1	Q8NH87	305 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	CNIH3	Q8TBE1	160 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	MRAP	Q8TCY5	172 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	STMN2	Q93045	179 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650		Q96MT0	163 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	SLC29A1	Q99808	456 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	C9orf16	Q9BUW7	83 aa		13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	13.85	□□□□□ -0.19
CHMP1A-205	ENST00000548650	MEIKIN	A0A087WXM9	373 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	IL1A	P01583	271 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	LIMS3	P0CW19	117 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	LIMS4	P0CW20	117 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	PF4V1	P10720	104 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	RAB3A	P20336	220 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	NFYB	P25208	207 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	MNDA	P41218	407 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	GTF2A1	P52655	376 aa	Predicted RBP	13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	PRRX1	P54821	245 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	PIGY	Q3MUY2	71 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	RSBN1	Q5VWQ0	802 aa	Predicted RBP	13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650		Q8NFD4	153 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	PLPPR1	Q8TBJ4	325 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	HAVCR2	Q8TDQ0	301 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	TNFAIP8L1	Q8WVP5	186 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	SGCD	Q92629	289 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	MYDGF	Q969H8	173 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	TOMM40L	Q969M1	308 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	CPNE2	Q96FN4	548 aa	Predicted RBP	13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	JAM3	Q9BX67	310 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	NCOR1P1	Q9H4R4	102 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	LINC00574	Q9H8X3	128 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	MRPS18A	Q9NVS2	196 aa	Known RBP	13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	TAS2R4	Q9NYW5	299 aa		13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650	TSSC4	Q9Y5U2	329 aa	Predicted RBP	13.84	□□□□□ -0.19
CHMP1A-205	ENST00000548650		A0A1W2PPI3	338 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	TCRBV4S1A1T	A0A5B7	111 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650		M0QZK8	103 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	IGLL1	P15814	213 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	CD33	P20138	364 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	SOX2	P48431	317 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	GBX2	P52951	348 aa	Predicted RBP	13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FOXB2	Q5VYV0	432 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	XAF1	Q6GPH4	301 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	CENPV	Q7Z7K6	275 aa	Predicted RBP	13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	OR4X2	Q8NGF9	303 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	OR10K1	Q8NGX5	313 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	LEAP2	Q969E1	77 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	RPE	Q96AT9	228 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	NR1H4	Q96RI1	486 aa	Predicted RBP	13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM192A	Q9GZU8	254 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	ZNF581	Q9P0T4	197 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	MOB4	Q9Y3A3	225 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	RPL36	Q9Y3U8	105 aa	Known RBP	13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	HSPE1-MOB4	S4R3N1	261 aa		13.83	□□□□□ -0.2
CHMP1A-205	ENST00000548650	LOC100130705	A0A1B0GUX0	176 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM90A18P	A6NE21	464 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM90A16P	A6NEW6	464 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM90A20P	A6NIJ5	464 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM90A9P	A6NNJ1	464 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM90A12P	A8MX19	464 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM90A5P	A8MXJ8	464 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	NPIPB11	E5RHQ5	1161 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650		J3QR06	171 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	IGHV3-7	P01780	117 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM90A15P	P0C7V4	464 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM90A13P	P0C7W8	464 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM90A14P	P0C7W9	464 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	FAM90A24P	P0C7X0	464 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	SSTR5	P35346	364 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	LOXL3	P58215	753 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	ASCL4	Q6XD76	172 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	OR56B4	Q8NH76	319 aa		13.82	□□□□□ -0.2
CHMP1A-205	ENST00000548650	MRGPRD	Q8TDS7	321 aa		13.82	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms