RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 TRGV10A0A0A0MS01 117 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 M0R1W7 72 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 HSPB6O14558 160 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 NOL3O60936 208 aaKnown RBP11.35□□□□□ -0.59
PTCH1-213ENST00000546820 GABARAPO95166 117 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 SLC2A2P11168 524 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-213ENST00000546820 RAB6AP20340 208 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 RPS19P39019 145 aaKnown RBP11.35□□□□□ -0.59
PTCH1-213ENST00000546820 TMBIM6P55061 237 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 SCAND1P57086 179 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 SCGB2A2Q13296 93 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 UNC119Q13432 240 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 IDNKQ5T6J7 187 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 TRAPPC6BQ86SZ2 158 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 NR2C2APQ86WQ0 139 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 CLVS1Q8IUQ0 354 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-213ENST00000546820 OR56B1Q8NGI3 324 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 BCL7BQ9BQE9 202 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 PCGF1Q9BSM1 259 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 LPAR5Q9H1C0 372 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 ING3Q9NXR8 418 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 OR6C3Q9NZP0 311 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 UBE2J1Q9Y385 318 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-213ENST00000546820 LINC00312Q9Y6C7 94 aa11.35□□□□□ -0.59
PTCH1-213ENST00000546820 TMEM272A0A1B0GTI8 110 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 LDLRAD4O15165 306 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 PDCD6O75340 191 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 CRLF1O75462 422 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 CA11O75493 328 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 BLVRBP30043 206 aaPredicted RBP11.34□□□□□ -0.59
PTCH1-213ENST00000546820 TGFBR1P36897 503 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 GLIPR1P48060 266 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 NCS1P62166 190 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 PAX5Q02548 391 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 ATXN7L3Q14CW9 347 aaPredicted RBP11.34□□□□□ -0.59
PTCH1-213ENST00000546820 SLC35E4Q6ICL7 350 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 SLC16A12Q6ZSM3 486 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 USP43Q70EL4 1123 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 FAM89BQ8N5H3 189 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 RAB2BQ8WUD1 216 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 CORO2AQ92828 525 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 UPRTQ96BW1 309 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 METTL8Q9H825 291 aaKnown RBP11.34□□□□□ -0.59
PTCH1-213ENST00000546820 PLEKHJ1Q9NW61 149 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 ABRACLQ9P1F3 81 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 RCC2Q9P258 522 aaKnown RBP11.34□□□□□ -0.59
PTCH1-213ENST00000546820 OPN4Q9UHM6 478 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 TLN2Q9Y4G6 2542 aa11.34□□□□□ -0.59
PTCH1-213ENST00000546820 MEIKINA0A087WXM9 373 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 TMEM30CPA0ZSE6 113 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 ODAMA1E959 279 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 AVPP01185 164 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 ZNF728P0DKX0 622 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 SRD5A1P18405 259 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 GZMHP20718 246 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 VEGFCP49767 419 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 RORCP51449 518 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 BPIFB3P59826 476 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 CTF1Q16619 201 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 NKAPLQ5M9Q1 402 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 BRICD5Q6PL45 260 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 Q6ZTK2 550 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 TPRX1Q8N7U7 411 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 SLC25A46Q96AG3 418 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 PHF21AQ96BD5 680 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 ZNF714Q96N38 554 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 NICN1Q9BSH3 213 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 NAA50Q9GZZ1 169 aaKnown RBP11.33□□□□□ -0.6
PTCH1-213ENST00000546820 SIRPDQ9H106 197 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 GAL3ST2Q9H3Q3 398 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 KCNK15Q9H427 330 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 ETAA1Q9NY74 926 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 TAS2R3Q9NYW6 316 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 ZNF581Q9P0T4 197 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 ETV7Q9Y603 341 aa11.33□□□□□ -0.6
PTCH1-213ENST00000546820 A0A0B4J203 849 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 UBE2QL1A1L167 161 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 SCGNO76038 276 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 RBP4P02753 201 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 SNRPBP14678 240 aaKnown RBP11.32□□□□□ -0.6
PTCH1-213ENST00000546820 MMP9P14780 707 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 PRTN3P24158 256 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 ERVFRD-1P60508 538 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 ARL6IP1Q15041 203 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 GPR157Q5UAW9 335 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 RSBN1Q5VWQ0 802 aaPredicted RBP11.32□□□□□ -0.6
PTCH1-213ENST00000546820 NCR3LG1Q68D85 454 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 SIGIRRQ6IA17 410 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 METAP1DQ6UB28 335 aaPredicted RBP11.32□□□□□ -0.6
PTCH1-213ENST00000546820 C1orf229Q6ZS94 237 aaPredicted RBP11.32□□□□□ -0.6
PTCH1-213ENST00000546820 VMO1Q7Z5L0 202 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 KCTD12Q96CX2 325 aaKnown RBP11.32□□□□□ -0.6
PTCH1-213ENST00000546820 COQ2Q96H96 371 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 ATG5Q9H1Y0 275 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 DCSTAMPQ9H295 470 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 RIMS4Q9H426 269 aaPredicted RBP11.32□□□□□ -0.6
PTCH1-213ENST00000546820 HEXA-AS1Q9H8Q6 139 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 UNKLQ9H9P5 680 aaKnown RBP11.32□□□□□ -0.6
PTCH1-213ENST00000546820 RAB9BQ9NP90 201 aa11.32□□□□□ -0.6
PTCH1-213ENST00000546820 KIF25Q9UIL4 384 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms