RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PHF1O43189 567 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 CSTAP01040 98 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 PLA2G5P39877 138 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 RPS4XP62701 263 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 FOXK1P85037 733 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 RPL18Q07020 188 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 FDX2Q6P4F2 183 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 LINC00346Q8IVM7 164 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 TMEM186Q96B77 213 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 SARAFQ96BY9 339 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 PLEKHF2Q9H8W4 249 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 A0A1W2PPV9 198 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 PITX3O75364 302 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 ATXN8OSP0DMR3 200 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 CTRLP40313 264 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 OR3A4PP47883 348 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 FAM57BQ71RH2 274 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 FOXQ1Q9C009 403 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 NKX2-4Q9H2Z4 354 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 TP53TG3Q9ULZ0 132 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 PXMP4Q9Y6I8 212 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 ZNF732B4DXR9 585 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 CYR61O00622 381 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 OR7C2O60412 319 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 ZNF737O75373 536 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 SELPP16109 830 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 PMCHP20382 165 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 CTSSP25774 331 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 BLVRBP30043 206 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 KCNG3Q8TAE7 436 aa10.47□□□□□ -0.73
LIMCH1-213ENST00000511496 TMEM14DPA8MWL7 114 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 MSTNO14793 375 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 GYPAP02724 150 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 TTRP02766 147 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 MPLP40238 635 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 MTCP1P56278 107 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 RPL15P61313 204 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 SCGB2A2Q13296 93 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 TMEM187Q14656 261 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 LINC00114Q6XXX2 140 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 KLHDC1Q8N7A1 406 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 CDRT4Q8N9R6 151 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 VN1R2Q8NFZ6 395 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 KLHDC3Q9BQ90 382 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 PAPPA2Q9BXP8 1791 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 NKX2-6A6NCS4 301 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 KBTBD11O94819 623 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 BGLAPP02818 100 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 CXorf66Q5JRM2 361 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 SP5Q6BEB4 398 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 LIN37Q96GY3 246 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 HDHD3Q9BSH5 251 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 PECRQ9BY49 303 aa10.46□□□□□ -0.73
LIMCH1-213ENST00000511496 DUXBA0A1W2PPF3 345 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 ZNF850A8MQ14 1090 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 SERPINE3A8MV23 424 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 TOX4O94842 621 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 AADACP22760 399 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 PRRX1P54821 245 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 PRDX1Q06830 199 aaKnown RBP10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 PRDX4Q13162 271 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 EXT1Q16394 746 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 DEFB134Q4QY38 66 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 LYPD6Q86Y78 171 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 ZNF440Q8IYI8 595 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 SELENOHQ8IZQ5 122 aaKnown RBP10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 TCTEX1D1Q8N7M0 179 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 OR2M3Q8NG83 312 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 OR1N2Q8NGR9 330 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 OR11L1Q8NGX0 322 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 OR4F5Q8NH21 305 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 PLPPR1Q8TBJ4 325 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 OR4F4Q96R69 305 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 NAA60Q9H7X0 242 aa10.46□□□□□ -0.74
LIMCH1-213ENST00000511496 CBLN1P23435 193 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 LINC00310P59036 64 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 PPP1CBP62140 327 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 CTHRC1Q96CG8 243 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 ANAPC16Q96DE5 110 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 SGCZQ96LD1 299 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 RTN4RQ9BZR6 473 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 THAP10Q9P2Z0 257 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 SHISA7A6NL88 538 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 ADH1BP00325 375 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 IFNA1P01562 189 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 TYMSP04818 313 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 SRP14P37108 136 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 AMTP48728 403 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 MRGPRGQ86SM5 289 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 OR2V1Q8NHB1 315 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 P2RX4Q99571 388 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 FAM60AQ9NP50 221 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 PNO1Q9NRX1 252 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 C19orf53Q9UNZ5 99 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 ANAPC1Q9H1A4 1944 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 IGLON5A6NGN9 336 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 HSPB2A8KAH6 182 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 LATO43561 262 aa10.45□□□□□ -0.74
LIMCH1-213ENST00000511496 IFNA5P01569 189 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms