RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 C3AR1Q16581 482 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 BRICD5Q6PL45 260 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 FBXW12Q6X9E4 464 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 CMTM1Q8IZ96 169 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.26□□□□□ -0.77
NUP54-202ENST00000502850 MSI2Q96DH6 328 aaKnown RBP10.26□□□□□ -0.77
NUP54-202ENST00000502850 C12orf49Q9H741 205 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 OR2S2Q9NQN1 319 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 MTCH1Q9NZJ7 389 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 ZNF581Q9P0T4 197 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 SPRR3Q9UBC9 169 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 DKK4Q9UBT3 224 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 POLDIP2Q9Y2S7 368 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 POMT1Q9Y6A1 747 aa10.26□□□□□ -0.77
NUP54-202ENST00000502850 CDRT15L2A8MXV6 281 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 MPPED1O15442 326 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 SCGB1D2O95969 90 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 NGFP01138 241 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 IGHG3P01860 377 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 PRKACAP17612 351 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 PVALBP20472 110 aaPredicted RBP10.25□□□□□ -0.77
NUP54-202ENST00000502850 SULT1A2P50226 295 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 GNMTQ14749 295 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 TGIF1Q15583 401 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 HIKESHIQ53FT3 197 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 HAGHLQ6PII5 290 aaPredicted RBP10.25□□□□□ -0.77
NUP54-202ENST00000502850 MDP1Q86V88 176 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 FOXRED2Q8IWF2 684 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 FAM58AQ8N1B3 248 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 SVBPQ8N300 66 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 UBAC2Q8NBM4 344 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 BPIFCQ8NFQ6 507 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 OR4A4PQ8NGN8 299 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 IL22RA2Q969J5 263 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 SMIM8Q96KF7 97 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 TMEM222Q9H0R3 208 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 ZNF552Q9H707 407 aaPredicted RBP10.25□□□□□ -0.77
NUP54-202ENST00000502850 CDH20Q9HBT6 801 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 TREM2Q9NZC2 230 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 FBXL17Q9UF56 701 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 RALYQ9UKM9 306 aaKnown RBP10.25□□□□□ -0.77
NUP54-202ENST00000502850 SPEGQ15772 3267 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 RTTNQ86VV8 2226 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 AHCTF1Q8WYP5 2266 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 DMXL2Q8TDJ6 3036 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 CFAP47Q6ZTR5 3102 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 TMEM218A2RU14 115 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 DEGS1O15121 323 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 KCNAB3O43448 404 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 TUSC2O75896 110 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 WNT5AP41221 380 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 PJVKQ0ZLH3 352 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 ZNF169Q14929 603 aaPredicted RBP10.25□□□□□ -0.77
NUP54-202ENST00000502850 DAZAP2Q15038 168 aaPredicted RBP10.25□□□□□ -0.77
NUP54-202ENST00000502850 GABRA6Q16445 453 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 TMEM268Q5VZI3 342 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 RPL7L1Q6DKI1 246 aaKnown RBP10.25□□□□□ -0.77
NUP54-202ENST00000502850 SPAG16Q8N0X2 631 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 BHLHE23Q8NDY6 225 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 LHFPL5Q8TAF8 219 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 GLYATL2Q8WU03 294 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 KIRREL1Q96J84 757 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 TMEM56Q96MV1 263 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 FGF23Q9GZV9 251 aaPredicted RBP10.25□□□□□ -0.77
NUP54-202ENST00000502850 PARP11Q9NR21 331 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 UBE2J1Q9Y385 318 aaPredicted RBP10.25□□□□□ -0.77
NUP54-202ENST00000502850 TMEM56-RWDD3S4R434 201 aa10.25□□□□□ -0.77
NUP54-202ENST00000502850 MBPP02686 304 aaPredicted RBP10.24□□□□□ -0.77
NUP54-202ENST00000502850 FAM157CP0CG43 387 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 TUBG1P23258 451 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 HOXC12P31275 282 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 F2RL1P55085 397 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 TMEM33P57088 247 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 HLA-DRB3P79483 266 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 DEFA5Q01523 94 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 BTN1A1Q13410 526 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 SWI5Q1ZZU3 235 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 SP6Q3SY56 376 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 IGSF11Q5DX21 431 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 SHEQ5VZ18 495 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 INO80CQ6PI98 192 aaPredicted RBP10.24□□□□□ -0.77
NUP54-202ENST00000502850 IGF2-ASQ6U949 168 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 FIP1L1Q6UN15 594 aaKnown RBP10.24□□□□□ -0.77
NUP54-202ENST00000502850 LYZL2Q7Z4W2 148 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 LDLRAD3Q86YD5 345 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 ZNF695Q8IW36 515 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 SUMF2Q8NBJ7 301 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 C1orf162Q8NEQ5 155 aaPredicted RBP10.24□□□□□ -0.77
NUP54-202ENST00000502850 SNIP1Q8TAD8 396 aaKnown RBP10.24□□□□□ -0.77
NUP54-202ENST00000502850 LRRC46Q96FV0 321 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 OR51I2Q9H344 312 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 TUBG2Q9NRH3 451 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 FAM212BQ9NTI7 297 aaPredicted RBP10.24□□□□□ -0.77
NUP54-202ENST00000502850 CLCF1Q9UBD9 225 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 AMDHD2Q9Y303 409 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 FAM208BQ5VWN6 2430 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 FREM1Q5H8C1 2179 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 APC2O95996 2303 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 CHD6Q8TD26 2715 aa10.24□□□□□ -0.77
NUP54-202ENST00000502850 TRAV17A0A0B4J275 112 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 135.5 ms